Wall clock time and date at job start Mon Mar 30 2020 01:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34038 * 126.77637 * 2 1 4 4 N 1.20924 * 111.56803 * 179.83000 * 3 2 1 5 5 C 1.30177 * 111.60060 * 0.45232 * 4 3 2 6 6 C 1.35446 * 126.77359 * 180.32306 * 2 1 3 7 7 S 1.76201 * 128.01275 * 359.97133 * 6 2 1 8 8 O 1.42104 * 106.40133 * 48.53984 * 7 6 2 9 9 O 1.42095 * 106.40535 * 181.46553 * 7 6 2 10 10 N 1.65609 * 107.21768 * 295.00558 * 7 6 2 11 11 C 1.47065 * 136.05515 * 269.62966 * 10 7 6 12 12 C 1.53756 * 87.88584 * 152.95938 * 11 10 7 13 13 C 1.50703 * 114.26165 * 139.78808 * 12 11 10 14 14 H 1.07997 * 120.00554 * 266.47189 * 13 12 11 15 15 C 1.37882 * 119.99496 * 86.47752 * 13 12 11 16 16 N 1.31518 * 120.00567 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99572 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47054 * 90.00026 * 17 15 13 19 19 H 1.48500 * 109.46937 * 209.99714 * 17 15 13 20 20 H 1.48502 * 109.47367 * 330.00212 * 17 15 13 21 21 C 1.47060 * 136.05793 * 89.99452 * 10 7 6 22 22 H 1.09001 * 109.46953 * 269.67965 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.67563 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.68194 * 1 2 3 25 25 H 1.08003 * 126.80174 * 179.75640 * 5 4 3 26 26 H 1.09002 * 113.46319 * 267.69537 * 11 10 7 27 27 H 1.09004 * 113.46821 * 38.13002 * 11 10 7 28 28 H 1.08992 * 114.39421 * 272.67187 * 12 11 10 29 29 H 0.96997 * 119.99950 * 180.02562 * 16 15 13 30 30 H 1.08998 * 113.46930 * 321.86586 * 21 10 7 31 31 H 1.08995 * 113.46724 * 92.24711 * 21 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7564 0.0033 5 6 3.6214 -0.5373 -0.0036 6 6 2.3179 -1.0849 -0.0061 7 16 1.8555 -2.7852 -0.0150 8 8 0.8789 -2.9300 -1.0370 9 8 3.0651 -3.5302 0.0154 10 7 1.0822 -3.0904 1.4173 11 6 1.4796 -3.5368 2.7610 12 6 0.2545 -2.7873 3.3102 13 6 -0.4776 -3.5172 4.4068 14 1 -1.3179 -4.1513 4.1659 15 6 -0.0746 -3.3752 5.7177 16 7 0.9490 -2.6033 6.0112 17 14 -0.9825 -4.2793 7.0770 18 1 -0.3581 -5.6097 7.2895 19 1 -0.9061 -3.4904 8.3329 20 1 -2.4051 -4.4564 6.6894 21 6 -0.3048 -3.0404 1.9034 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3634 0.8929 -0.5088 24 1 -0.3633 -0.8871 -0.5188 25 1 4.5529 -1.0839 -0.0063 26 1 1.4230 -4.6172 2.8938 27 1 2.4304 -3.1200 3.0935 28 1 0.4342 -1.7366 3.5374 29 1 1.2327 -2.5037 6.9334 30 1 -0.8744 -2.2007 1.5053 31 1 -0.8322 -3.9896 1.8092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187324739.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:52 Heat of formation + Delta-G solvation = 23.353035 kcal Electronic energy + Delta-G solvation = -19247.638060 eV Core-core repulsion = 16047.151764 eV Total energy + Delta-G solvation = -3200.486297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.08275 -38.35340 -36.95460 -35.61422 -34.33325 -33.34214 -32.68246 -28.42211 -28.04394 -25.05619 -24.66003 -24.12393 -22.00978 -20.00319 -18.48712 -17.84659 -17.80004 -17.03464 -16.50026 -16.21325 -15.52140 -14.65907 -14.45097 -14.12323 -13.65155 -13.38584 -13.16352 -12.91347 -12.79925 -11.93518 -11.82378 -11.77306 -11.65650 -11.57720 -11.48661 -11.22677 -11.03513 -10.84965 -10.61375 -10.36660 -9.72898 -9.31274 -9.15976 -8.65592 -8.34334 -6.21265 -4.26584 0.56526 1.07566 1.88769 2.86070 3.22199 3.29708 3.30843 3.34503 3.95662 4.07536 4.30604 4.36051 4.47564 4.92530 5.08728 5.13027 5.24924 5.37919 5.66576 5.72517 5.79337 6.08234 6.14970 6.28061 6.40247 6.63345 6.77607 7.39557 7.53985 7.76055 8.00132 8.14724 8.77245 9.40102 10.88198 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.005833 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.963052 B = 4799.127272 C = 5115.666656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.111 3.889 3 O 0.094 5.906 4 N -0.366 5.366 5 C 0.080 3.920 6 C -0.788 4.788 7 S 2.743 3.257 8 O -0.962 6.962 9 O -0.959 6.959 10 N -1.047 6.047 11 C 0.131 3.869 12 C 0.035 3.965 13 C -0.518 4.518 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.885 5.885 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.125 3.875 22 H 0.113 0.887 23 H 0.099 0.901 24 H 0.111 0.889 25 H 0.204 0.796 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.264 0.736 30 H 0.055 0.945 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 3.985 -9.399 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.044 3.956 3 O 0.035 5.965 4 N -0.072 5.072 5 C -0.102 4.102 6 C -0.874 4.874 7 S 2.831 3.169 8 O -0.952 6.952 9 O -0.949 6.949 10 N -0.889 5.889 11 C 0.006 3.994 12 C 0.014 3.986 13 C -0.557 4.557 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.522 5.522 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.000 4.000 22 H 0.132 0.868 23 H 0.118 0.882 24 H 0.130 0.870 25 H 0.221 0.779 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.355 4.666 -10.164 11.190 hybrid contribution -0.289 -0.533 1.022 1.188 sum 0.066 4.134 -9.142 10.034 Atomic orbital electron populations 1.21009 0.82842 1.06702 1.06310 1.24504 0.96387 0.84521 0.90145 1.84821 1.11631 1.33542 1.66457 1.73831 0.96577 1.16737 1.20088 1.24645 0.98139 0.89486 0.97897 1.33401 1.00724 1.27019 1.26266 1.00346 0.72820 0.72007 0.71750 1.93539 1.60971 1.85446 1.55242 1.93534 1.46975 1.67994 1.86430 1.59868 1.20781 1.81071 1.27214 1.23174 1.01285 0.99798 0.75103 1.20526 0.91118 0.97544 0.89432 1.20970 1.15467 1.28527 0.90726 0.91706 1.25038 0.94852 0.94779 0.98881 1.69945 1.25602 1.37201 1.19470 0.86549 0.80255 0.79720 0.81219 1.20505 1.21219 1.19674 1.22913 0.80787 1.00405 0.95851 0.86838 0.88220 0.87026 0.77949 0.90594 0.92341 0.91460 0.92608 0.92612 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.95 36.01 0.36 -0.80 16 2 C 0.11 1.55 7.49 -35.30 -0.26 1.28 16 3 O 0.09 1.39 11.20 17.18 0.19 1.58 16 4 N -0.37 -5.80 12.07 30.36 0.37 -5.43 16 5 C 0.08 1.23 11.98 -17.06 -0.20 1.02 16 6 C -0.79 -12.35 6.37 -39.38 -0.25 -12.60 16 7 S 2.74 47.02 6.22 -107.50 -0.67 46.35 16 8 O -0.96 -17.25 16.90 -57.17 -0.97 -18.21 16 9 O -0.96 -18.61 17.87 -57.17 -1.02 -19.63 16 10 N -1.05 -18.77 4.23 -125.05 -0.53 -19.30 16 11 C 0.13 2.67 8.31 -8.38 -0.07 2.60 16 12 C 0.03 0.75 3.79 -91.12 -0.35 0.40 16 13 C -0.52 -12.42 8.83 -34.44 -0.30 -12.73 16 14 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.45 13.26 55.43 0.74 -22.72 16 17 Si 0.90 19.46 29.54 -169.99 -5.02 14.44 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 C 0.13 2.19 8.29 -8.52 -0.07 2.11 16 22 H 0.11 1.09 7.83 -51.93 -0.41 0.68 16 23 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.11 1.19 6.93 -51.93 -0.36 0.83 16 25 H 0.20 2.58 8.06 -52.48 -0.42 2.16 16 26 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.54 8.11 -51.93 -0.42 1.12 16 29 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 31 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 LS Contribution 290.07 15.07 4.37 4.37 Total: -1.00 -29.79 290.07 -7.02 -36.80 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.23 Total: -1.17 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.25 Total: -17.08 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.57 Total: -47.45 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.80 Total: -36.27 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: 47.02 SS G_CDS: -0.67 Total: 46.35 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.79 -7.02 -36.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187324739.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.158 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds