Wall clock time and date at job start Mon Mar 30 2020 01:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99765 * 2 1 4 4 H 1.48494 * 109.47505 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.46893 * 30.00295 * 3 2 1 6 6 H 1.48505 * 109.46828 * 149.99883 * 3 2 1 7 7 C 1.37877 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00404 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99706 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40146 * 66.45646 * 9 7 2 11 11 O 1.42095 * 106.40229 * 293.53903 * 9 7 2 12 12 N 1.65602 * 107.21635 * 179.97438 * 9 7 2 13 13 C 1.46498 * 119.99612 * 65.28001 * 12 9 7 14 14 C 1.53001 * 109.47089 * 164.71987 * 13 12 9 15 15 H 1.09003 * 109.47199 * 305.00190 * 14 13 12 16 16 O 1.42909 * 109.46798 * 64.99774 * 14 13 12 17 17 C 1.50699 * 109.47156 * 184.99767 * 14 13 12 18 18 C 1.38666 * 120.42043 * 100.00136 * 17 14 13 19 19 C 1.38624 * 118.42545 * 180.02562 * 18 17 14 20 20 C 1.38233 * 119.16009 * 359.97438 * 19 18 17 21 21 N 1.31859 * 120.76215 * 0.02562 * 20 19 18 22 22 C 1.31892 * 121.72159 * 359.69932 * 21 20 19 23 23 H 0.97001 * 120.00277 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99942 * 244.99525 * 12 9 7 25 25 H 1.08996 * 109.46882 * 284.72133 * 13 12 9 26 26 H 1.08999 * 109.47498 * 44.72066 * 13 12 9 27 27 H 0.96698 * 113.99747 * 60.00439 * 16 14 13 28 28 H 1.08004 * 120.78620 * 359.97438 * 18 17 14 29 29 H 1.07995 * 120.42631 * 180.02562 * 19 18 17 30 30 H 1.07998 * 119.62212 * 179.97438 * 20 19 18 31 31 H 1.07997 * 119.61097 * 180.31243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 3.1354 -4.1125 1.1530 14 6 3.7957 -5.4908 1.0813 15 1 3.0262 -6.2588 1.0029 16 8 4.6478 -5.5516 -0.0644 17 6 4.6116 -5.7223 2.3270 18 6 4.1080 -6.4947 3.3627 19 6 4.8935 -6.6803 4.4897 20 6 6.1441 -6.0939 4.5431 21 7 6.5909 -5.3654 3.5388 22 6 5.8732 -5.1721 2.4493 23 1 -0.4850 0.8400 -0.0004 24 1 2.3173 -4.5325 -0.7608 25 1 3.9043 -3.3401 1.1418 26 1 2.5558 -4.0348 2.0729 27 1 5.3576 -4.8949 -0.0620 28 1 3.1267 -6.9404 3.2932 29 1 4.5334 -7.2762 5.3153 30 1 6.7622 -6.2332 5.4177 31 1 6.2747 -4.5733 1.6452 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:05 Heat of formation + Delta-G solvation = -110.692623 kcal Electronic energy + Delta-G solvation = -18602.456959 eV Core-core repulsion = 15396.158007 eV Total energy + Delta-G solvation = -3206.298953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49967 -37.68647 -35.23154 -33.98773 -33.89185 -33.08536 -32.78841 -31.56090 -27.60006 -26.14903 -23.90901 -23.61880 -21.61340 -19.02178 -17.89050 -17.38963 -16.78332 -16.70325 -16.25135 -15.42659 -14.97764 -14.70023 -14.58398 -14.02080 -13.97201 -13.68007 -13.28614 -13.22995 -12.63551 -12.23552 -12.00173 -11.53073 -11.27890 -11.22657 -10.75484 -10.61757 -10.31254 -10.25574 -10.20371 -9.90684 -9.55846 -9.26150 -9.16511 -9.06447 -8.53415 -6.71662 -5.33815 0.89096 1.10232 2.31491 3.05880 3.12777 3.18587 3.60821 4.03478 4.17812 4.33067 4.47577 4.63042 4.65151 4.76492 4.81785 4.85932 5.10650 5.20929 5.37070 5.53577 5.72141 5.87595 5.92694 5.95458 6.18035 6.42663 6.48720 6.78332 7.30277 7.49205 7.78089 7.88392 7.96114 8.87467 10.22571 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.005208 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.841018 B = 5375.512417 C = 5854.695269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.715 3.285 10 O -1.005 7.005 11 O -1.008 7.008 12 N -1.133 6.133 13 C 0.102 3.898 14 C 0.145 3.855 15 H 0.117 0.883 16 O -0.549 6.549 17 C -0.163 4.163 18 C -0.063 4.063 19 C -0.171 4.171 20 C 0.094 3.906 21 N -0.483 5.483 22 C 0.109 3.891 23 H 0.291 0.709 24 H 0.407 0.593 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.376 0.624 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.155 0.845 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.728 -10.607 6.467 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.815 3.185 10 O -0.995 6.995 11 O -0.998 6.998 12 N -0.888 5.888 13 C -0.026 4.026 14 C 0.084 3.916 15 H 0.134 0.866 16 O -0.355 6.355 17 C -0.166 4.166 18 C -0.089 4.089 19 C -0.191 4.191 20 C -0.063 4.063 21 N -0.191 5.191 22 C -0.048 4.048 23 H 0.101 0.899 24 H 0.238 0.762 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.224 0.776 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.172 0.828 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.020 -10.645 6.544 16.017 hybrid contribution 0.517 1.069 -0.085 1.190 sum 10.537 -9.576 6.459 15.635 Atomic orbital electron populations 1.69894 1.06781 1.30746 1.40044 1.24746 0.94465 1.00839 0.88495 0.86165 0.80129 0.80082 0.79186 1.19167 1.19984 1.18707 1.30536 1.06036 1.11895 1.66935 0.88034 1.00395 0.72057 0.73231 0.72808 1.93380 1.73039 1.87591 1.45526 1.93353 1.72852 1.87535 1.46065 1.55926 1.55461 1.51357 1.26054 1.21692 0.94566 0.95749 0.90609 1.21045 0.90715 0.98233 0.81603 0.86570 1.86627 1.45607 1.60545 1.42703 1.21559 0.97322 0.99531 0.98207 1.21518 0.99806 0.95159 0.92384 1.22152 0.95984 1.01804 0.99116 1.22801 0.93918 0.92760 0.96773 1.67703 1.35945 1.14613 1.00838 1.22513 0.90614 0.96299 0.95419 0.89872 0.76162 0.91660 0.89713 0.77571 0.84350 0.84585 0.82765 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.73 13.19 55.43 0.73 -24.00 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -1.02 -27.60 9.72 30.60 0.30 -27.30 16 8 H 0.10 2.49 7.81 -52.49 -0.41 2.08 16 9 S 2.72 70.51 5.02 -107.50 -0.54 69.97 16 10 O -1.00 -29.20 18.02 -57.17 -1.03 -30.23 16 11 O -1.01 -28.84 17.48 -57.17 -1.00 -29.84 16 12 N -1.13 -21.51 5.96 -10.61 -0.06 -21.57 16 13 C 0.10 1.60 5.85 -4.04 -0.02 1.58 16 14 C 0.15 1.79 3.32 -27.88 -0.09 1.69 16 15 H 0.12 1.36 8.03 -51.93 -0.42 0.95 16 16 O -0.55 -6.58 12.99 -35.23 -0.46 -7.04 16 17 C -0.16 -1.86 4.98 -104.49 -0.52 -2.38 16 18 C -0.06 -0.64 9.82 -39.28 -0.39 -1.03 16 19 C -0.17 -1.55 10.11 -39.44 -0.40 -1.95 16 20 C 0.09 0.94 11.18 -17.54 -0.20 0.75 16 21 N -0.48 -5.90 10.36 -13.25 -0.14 -6.03 16 22 C 0.11 1.25 10.49 -17.55 -0.18 1.06 16 23 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.41 6.91 8.51 -34.47 -0.29 6.62 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16 27 H 0.38 3.33 7.52 45.56 0.34 3.67 16 28 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 29 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.15 1.42 6.79 -52.49 -0.36 1.06 16 LS Contribution 291.87 15.07 4.40 4.40 Total: -1.00 -36.80 291.87 -7.08 -43.89 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -2.36 Total: 9.06 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -1.60 Total: -24.01 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.53 Total: -51.60 kcal Atomic # 8 Polarization: -64.62 SS G_CDS: -2.49 Total: -67.11 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 70.51 SS G_CDS: -0.54 Total: 69.97 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -36.80 -7.08 -43.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.807 kcal (2) G-P(sol) polarization free energy of solvation -36.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds