Wall clock time and date at job start Mon Mar 30 2020 01:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99765 * 2 1 4 4 H 1.48494 * 109.47505 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.46893 * 30.00295 * 3 2 1 6 6 H 1.48505 * 109.46828 * 149.99883 * 3 2 1 7 7 C 1.37877 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00404 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99706 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40146 * 66.45646 * 9 7 2 11 11 O 1.42095 * 106.40229 * 293.53903 * 9 7 2 12 12 N 1.65602 * 107.21635 * 179.97438 * 9 7 2 13 13 C 1.46498 * 119.99612 * 65.28001 * 12 9 7 14 14 C 1.53001 * 109.47089 * 164.71987 * 13 12 9 15 15 H 1.09003 * 109.47199 * 305.00190 * 14 13 12 16 16 O 1.42909 * 109.46798 * 64.99774 * 14 13 12 17 17 C 1.50699 * 109.47156 * 184.99767 * 14 13 12 18 18 C 1.38666 * 120.42043 * 100.00136 * 17 14 13 19 19 C 1.38624 * 118.42545 * 180.02562 * 18 17 14 20 20 C 1.38233 * 119.16009 * 359.97438 * 19 18 17 21 21 N 1.31859 * 120.76215 * 0.02562 * 20 19 18 22 22 C 1.31892 * 121.72159 * 359.69932 * 21 20 19 23 23 H 0.97001 * 120.00277 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99942 * 244.99525 * 12 9 7 25 25 H 1.08996 * 109.46882 * 284.72133 * 13 12 9 26 26 H 1.08999 * 109.47498 * 44.72066 * 13 12 9 27 27 H 0.96698 * 113.99747 * 60.00439 * 16 14 13 28 28 H 1.08004 * 120.78620 * 359.97438 * 18 17 14 29 29 H 1.07995 * 120.42631 * 180.02562 * 19 18 17 30 30 H 1.07998 * 119.62212 * 179.97438 * 20 19 18 31 31 H 1.07997 * 119.61097 * 180.31243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 3.1354 -4.1125 1.1530 14 6 3.7957 -5.4908 1.0813 15 1 3.0262 -6.2588 1.0029 16 8 4.6478 -5.5516 -0.0644 17 6 4.6116 -5.7223 2.3270 18 6 4.1080 -6.4947 3.3627 19 6 4.8935 -6.6803 4.4897 20 6 6.1441 -6.0939 4.5431 21 7 6.5909 -5.3654 3.5388 22 6 5.8732 -5.1721 2.4493 23 1 -0.4850 0.8400 -0.0004 24 1 2.3173 -4.5325 -0.7608 25 1 3.9043 -3.3401 1.1418 26 1 2.5558 -4.0348 2.0729 27 1 5.3576 -4.8949 -0.0620 28 1 3.1267 -6.9404 3.2932 29 1 4.5334 -7.2762 5.3153 30 1 6.7622 -6.2332 5.4177 31 1 6.2747 -4.5733 1.6452 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:05 Heat of formation + Delta-G solvation = -143.292377 kcal Electronic energy + Delta-G solvation = -18603.870591 eV Core-core repulsion = 15396.158007 eV Total energy + Delta-G solvation = -3207.712584 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31074 -38.69362 -37.39202 -36.14606 -35.37678 -35.05302 -33.66052 -32.37074 -28.73052 -28.25638 -24.89274 -24.47268 -22.57074 -21.00912 -19.40629 -18.63425 -18.29533 -17.69734 -17.57188 -17.03176 -16.50231 -16.02414 -15.71972 -15.62429 -15.28155 -14.84035 -14.60336 -14.03193 -13.97499 -13.81191 -13.27253 -13.06327 -13.01050 -12.61936 -12.51350 -12.49956 -12.39544 -12.30398 -11.28949 -11.24750 -11.02497 -10.75759 -10.38610 -10.24280 -9.94732 -8.75403 -7.48144 0.08466 0.31606 0.39025 1.34869 1.35149 1.50863 2.20707 2.58437 2.80053 2.95963 3.42646 3.44073 3.67965 3.79298 3.83556 3.91878 4.08112 4.11978 4.28563 4.51183 4.60541 4.62729 4.78508 4.89665 5.06645 5.18643 5.30327 5.31736 5.74804 5.89780 6.37676 6.70912 6.78823 7.00286 8.21054 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.005208 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.841018 B = 5375.512417 C = 5854.695269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.990 3.010 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.247 1.247 7 C -1.040 5.040 8 H 0.122 0.878 9 S 2.722 3.278 10 O -1.045 7.045 11 O -1.043 7.043 12 N -1.116 6.116 13 C 0.093 3.907 14 C 0.162 3.838 15 H 0.122 0.878 16 O -0.556 6.556 17 C -0.175 4.175 18 C -0.073 4.073 19 C -0.167 4.167 20 C 0.086 3.914 21 N -0.510 5.510 22 C 0.096 3.904 23 H 0.299 0.701 24 H 0.418 0.582 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.389 0.611 28 H 0.154 0.846 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.622 -10.666 7.258 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.170 1.170 7 C -1.173 5.173 8 H 0.140 0.860 9 S 2.823 3.177 10 O -1.035 7.035 11 O -1.033 7.033 12 N -0.876 5.876 13 C -0.034 4.034 14 C 0.101 3.899 15 H 0.139 0.861 16 O -0.364 6.364 17 C -0.178 4.178 18 C -0.099 4.099 19 C -0.186 4.186 20 C -0.070 4.070 21 N -0.219 5.219 22 C -0.061 4.061 23 H 0.109 0.891 24 H 0.252 0.748 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.240 0.760 28 H 0.172 0.828 29 H 0.184 0.816 30 H 0.198 0.802 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 11.920 -10.727 7.328 17.631 hybrid contribution -0.023 0.975 -0.275 1.014 sum 11.897 -9.752 7.053 16.923 Atomic orbital electron populations 1.69990 1.08782 1.32317 1.41471 1.26012 0.95361 1.05409 0.87584 0.85132 0.79173 0.74885 0.80009 1.17959 1.18868 1.16989 1.30905 1.07256 1.12533 1.66608 0.85985 0.99821 0.72553 0.73947 0.71423 1.93316 1.74912 1.88393 1.46900 1.93301 1.74505 1.88264 1.47227 1.55250 1.54876 1.49832 1.27625 1.21992 0.94124 0.98720 0.88582 1.20793 0.90882 0.95893 0.82380 0.86065 1.86603 1.46033 1.61173 1.42609 1.21465 0.97424 1.00765 0.98169 1.21864 1.00712 0.94886 0.92439 1.22493 0.95355 1.01331 0.99471 1.23343 0.94696 0.91960 0.97020 1.67733 1.36746 1.15803 1.01624 1.22781 0.90781 0.96620 0.95883 0.89136 0.74769 0.90547 0.90871 0.76013 0.82809 0.81560 0.80221 0.81485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.07 13.19 21.45 0.28 -52.79 16 2 C 0.07 3.81 5.46 84.65 0.46 4.27 16 3 Si 0.99 40.76 29.54 68.60 2.03 42.79 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -1.04 -55.95 9.72 67.73 0.66 -55.29 16 8 H 0.12 5.82 7.81 -2.91 -0.02 5.80 16 9 S 2.72 143.37 5.02 -56.49 -0.28 143.09 16 10 O -1.04 -62.15 18.02 -128.00 -2.31 -64.46 16 11 O -1.04 -61.08 17.48 -128.00 -2.24 -63.31 16 12 N -1.12 -41.97 5.96 -187.50 -1.12 -43.08 16 13 C 0.09 2.84 5.85 86.38 0.51 3.34 16 14 C 0.16 3.75 3.32 29.85 0.10 3.85 16 15 H 0.12 2.67 8.03 -2.39 -0.02 2.65 16 16 O -0.56 -12.36 12.99 -148.98 -1.94 -14.30 16 17 C -0.18 -3.73 4.98 -19.78 -0.10 -3.83 16 18 C -0.07 -1.35 9.82 22.46 0.22 -1.13 16 19 C -0.17 -2.61 10.11 22.36 0.23 -2.38 16 20 C 0.09 1.53 11.18 84.69 0.95 2.48 16 21 N -0.51 -11.67 10.36 -195.83 -2.03 -13.70 16 22 C 0.10 2.06 10.49 84.67 0.89 2.95 16 23 H 0.30 15.92 8.31 -92.71 -0.77 15.15 16 24 H 0.42 13.94 8.51 -96.74 -0.82 13.12 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.07 2.43 7.74 -2.39 -0.02 2.41 16 27 H 0.39 6.17 7.52 -74.06 -0.56 5.61 16 28 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.17 2.85 6.79 -2.91 -0.02 2.83 16 Total: -1.00 -79.77 291.87 -3.89 -83.66 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.20 Total: 27.84 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 3.91 Total: -45.73 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -2.86 Total: -109.58 kcal Atomic # 8 Polarization: -135.59 SS G_CDS: -6.48 Total: -142.07 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 143.37 SS G_CDS: -0.28 Total: 143.09 kcal Total: -79.77 -3.89 -83.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.634 kcal (2) G-P(sol) polarization free energy of solvation -79.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds