Wall clock time and date at job start Mon Mar 30 2020 01:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35672 * 117.00343 * 2 1 4 4 C 1.38920 * 119.68665 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11283 * 179.97438 * 4 3 2 6 6 C 1.38833 * 118.48491 * 359.73194 * 5 4 3 7 7 C 1.38049 * 119.28413 * 0.52876 * 6 5 4 8 8 C 1.50704 * 119.57889 * 179.73521 * 7 6 5 9 9 N 1.46497 * 109.47108 * 94.72746 * 8 7 6 10 10 S 1.65608 * 119.99652 * 164.99992 * 9 8 7 11 11 O 1.42104 * 106.39724 * 178.54027 * 10 9 8 12 12 O 1.42097 * 106.40199 * 311.45938 * 10 9 8 13 13 C 1.76195 * 107.21632 * 65.00196 * 10 9 8 14 14 H 1.08001 * 120.00866 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99874 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00033 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00076 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47022 * 90.00022 * 17 15 13 19 19 H 1.48503 * 109.47301 * 209.99571 * 17 15 13 20 20 H 1.48496 * 109.47405 * 329.99823 * 17 15 13 21 21 N 1.31958 * 120.83969 * 359.46009 * 7 6 5 22 22 H 1.08995 * 109.47164 * 59.99267 * 1 2 3 23 23 H 1.08998 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46604 * 299.99550 * 1 2 3 25 25 H 1.08003 * 120.44463 * 359.95425 * 4 3 2 26 26 H 1.08001 * 120.75337 * 180.02562 * 5 4 3 27 27 H 1.07999 * 120.35317 * 180.26333 * 6 5 4 28 28 H 1.09005 * 109.46813 * 334.73068 * 8 7 6 29 29 H 1.09000 * 109.47056 * 214.73434 * 8 7 6 30 30 H 0.96997 * 120.00126 * 344.99915 * 9 8 7 31 31 H 0.96997 * 119.99891 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 -0.0005 5 6 4.0486 2.5130 -0.0011 6 6 3.2506 3.6491 -0.0068 7 6 1.8772 3.5096 -0.0006 8 6 1.0047 4.7383 -0.0006 9 7 0.6234 5.0664 -1.3765 10 16 -0.6169 6.1261 -1.6616 11 8 -0.7152 6.2582 -3.0731 12 8 -1.6998 5.7060 -0.8430 13 6 -0.1106 7.6985 -1.0488 14 1 0.8610 7.8126 -0.5912 15 6 -0.9549 8.7836 -1.1534 16 7 -2.1379 8.6450 -1.7111 17 14 -0.4185 10.4505 -0.5031 18 1 0.2761 11.2017 -1.5795 19 1 -1.6108 11.2148 -0.0564 20 1 0.5058 10.2605 0.6436 21 7 1.3187 2.3140 0.0000 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 4.0230 0.3694 -0.0002 26 1 5.1256 2.5944 -0.0019 27 1 3.6996 4.6313 -0.0116 28 1 1.5540 5.5739 0.4333 29 1 0.1082 4.5474 0.5893 30 1 1.0973 4.6630 -2.1205 31 1 -2.7316 9.4084 -1.7850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995745.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:35 Heat of formation + Delta-G solvation = -93.442994 kcal Electronic energy + Delta-G solvation = -18536.742266 eV Core-core repulsion = 15331.191313 eV Total energy + Delta-G solvation = -3205.550953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65322 -38.07499 -35.24983 -34.64833 -33.92869 -33.07289 -32.35039 -30.59244 -27.49353 -26.13280 -25.62339 -22.96182 -22.05278 -19.05596 -18.18619 -17.50743 -16.90380 -16.14150 -16.02273 -15.97778 -15.37329 -14.81504 -14.46216 -14.02334 -13.79168 -13.48169 -13.21198 -12.92416 -12.63324 -12.10544 -11.95606 -11.72258 -11.27589 -11.21189 -11.16877 -10.60287 -10.50683 -10.26916 -10.17165 -9.90839 -9.55289 -9.24356 -9.03952 -8.53797 -8.47690 -6.69594 -5.31936 1.03700 1.26450 2.36631 3.06378 3.07262 3.14197 3.19958 3.72874 4.07276 4.15865 4.64718 4.72417 4.85283 4.98698 5.05355 5.19683 5.30008 5.35778 5.51915 5.66149 5.72772 5.84325 6.00630 6.03837 6.14475 6.41201 6.46489 6.79875 7.19714 7.32274 7.86111 7.90593 7.97073 8.89186 10.24660 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.030009 B = 0.004956 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.832782 B = 5648.007364 C = 6196.162141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.312 6.312 3 C 0.318 3.682 4 C -0.195 4.195 5 C -0.043 4.043 6 C -0.196 4.196 7 C 0.168 3.832 8 C 0.175 3.825 9 N -1.129 6.129 10 S 2.716 3.284 11 O -1.005 7.005 12 O -1.004 7.004 13 C -1.021 5.021 14 H 0.103 0.897 15 C 0.132 3.868 16 N -0.845 5.845 17 Si 0.921 3.079 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.263 1.263 21 N -0.523 5.523 22 H 0.062 0.938 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.402 0.598 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.137 -11.175 5.052 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.219 6.219 3 C 0.138 3.862 4 C -0.216 4.216 5 C -0.069 4.069 6 C -0.217 4.217 7 C 0.030 3.970 8 C 0.048 3.952 9 N -0.884 5.884 10 S 2.815 3.185 11 O -0.996 6.996 12 O -0.993 6.993 13 C -1.154 5.154 14 H 0.121 0.879 15 C -0.086 4.086 16 N -0.474 5.474 17 Si 0.745 3.255 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.187 1.187 21 N -0.248 5.248 22 H 0.080 0.920 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.233 0.767 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.198 -11.619 4.745 15.560 hybrid contribution 1.544 1.209 0.260 1.978 sum 10.742 -10.410 5.005 15.774 Atomic orbital electron populations 1.22888 0.76950 1.02754 1.03107 1.86202 1.23165 1.24587 1.87931 1.19862 0.89348 0.84759 0.92215 1.21040 0.92000 0.99560 1.08975 1.21395 1.00486 0.91179 0.93815 1.21931 0.93985 1.00318 1.05506 1.21106 0.91957 0.91645 0.92296 1.19966 0.98567 0.91429 0.85238 1.55985 1.57117 1.64510 1.10754 1.00432 0.71053 0.73895 0.73078 1.93377 1.85571 1.87514 1.33097 1.93361 1.51909 1.83560 1.70516 1.30545 1.12679 1.16244 1.55934 0.87882 1.24753 0.92772 1.00753 0.90291 1.69900 1.07399 1.34168 1.35974 0.86151 0.79033 0.80525 0.79749 1.19244 1.20011 1.18652 1.67174 1.40983 0.98368 1.18228 0.91950 0.88766 0.92029 0.84333 0.84081 0.83979 0.90079 0.88855 0.76746 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.49 16 2 O -0.31 -4.15 10.48 -18.72 -0.20 -4.34 16 3 C 0.32 4.49 7.49 -17.12 -0.13 4.36 16 4 C -0.19 -2.21 10.04 -39.28 -0.39 -2.60 16 5 C -0.04 -0.44 10.17 -39.31 -0.40 -0.84 16 6 C -0.20 -2.36 9.71 -39.43 -0.38 -2.75 16 7 C 0.17 2.55 6.17 -82.61 -0.51 2.04 16 8 C 0.18 3.03 6.53 -5.19 -0.03 2.99 16 9 N -1.13 -22.57 5.99 -11.65 -0.07 -22.64 16 10 S 2.72 71.66 5.02 -107.50 -0.54 71.12 16 11 O -1.01 -29.53 18.02 -57.17 -1.03 -30.56 16 12 O -1.00 -29.30 17.49 -57.17 -1.00 -30.30 16 13 C -1.02 -27.50 9.72 30.60 0.30 -27.21 16 14 H 0.10 2.49 7.81 -52.49 -0.41 2.08 16 15 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 16 N -0.84 -24.74 13.19 55.43 0.73 -24.01 16 17 Si 0.92 20.26 29.54 -169.99 -5.02 15.24 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 N -0.52 -8.39 9.13 -9.55 -0.09 -8.48 16 22 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 26 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 29 H 0.09 1.73 7.75 -51.93 -0.40 1.33 16 30 H 0.40 7.23 8.64 -34.48 -0.30 6.93 16 31 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 294.93 15.07 4.44 4.44 Total: -1.00 -35.96 294.93 -6.56 -42.53 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.20 Total: 5.96 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -0.60 Total: -18.95 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.57 Total: -55.13 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -2.23 Total: -65.20 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 71.66 SS G_CDS: -0.54 Total: 71.12 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.96 -6.56 -42.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995745.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.916 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds