Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35672 * 117.00343 * 2 1 4 4 C 1.38920 * 119.68665 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11283 * 179.97438 * 4 3 2 6 6 C 1.38833 * 118.48491 * 359.73194 * 5 4 3 7 7 C 1.38049 * 119.28413 * 0.52876 * 6 5 4 8 8 C 1.50704 * 119.57889 * 179.73521 * 7 6 5 9 9 N 1.46497 * 109.47108 * 94.72746 * 8 7 6 10 10 S 1.65608 * 119.99652 * 164.99992 * 9 8 7 11 11 O 1.42104 * 106.39724 * 178.54027 * 10 9 8 12 12 O 1.42097 * 106.40199 * 311.45938 * 10 9 8 13 13 C 1.76195 * 107.21632 * 65.00196 * 10 9 8 14 14 H 1.08001 * 120.00866 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99874 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00033 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00076 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47022 * 90.00022 * 17 15 13 19 19 H 1.48503 * 109.47301 * 209.99571 * 17 15 13 20 20 H 1.48496 * 109.47405 * 329.99823 * 17 15 13 21 21 N 1.31958 * 120.83969 * 359.46009 * 7 6 5 22 22 H 1.08995 * 109.47164 * 59.99267 * 1 2 3 23 23 H 1.08998 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46604 * 299.99550 * 1 2 3 25 25 H 1.08003 * 120.44463 * 359.95425 * 4 3 2 26 26 H 1.08001 * 120.75337 * 180.02562 * 5 4 3 27 27 H 1.07999 * 120.35317 * 180.26333 * 6 5 4 28 28 H 1.09005 * 109.46813 * 334.73068 * 8 7 6 29 29 H 1.09000 * 109.47056 * 214.73434 * 8 7 6 30 30 H 0.96997 * 120.00126 * 344.99915 * 9 8 7 31 31 H 0.96997 * 119.99891 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 -0.0005 5 6 4.0486 2.5130 -0.0011 6 6 3.2506 3.6491 -0.0068 7 6 1.8772 3.5096 -0.0006 8 6 1.0047 4.7383 -0.0006 9 7 0.6234 5.0664 -1.3765 10 16 -0.6169 6.1261 -1.6616 11 8 -0.7152 6.2582 -3.0731 12 8 -1.6998 5.7060 -0.8430 13 6 -0.1106 7.6985 -1.0488 14 1 0.8610 7.8126 -0.5912 15 6 -0.9549 8.7836 -1.1534 16 7 -2.1379 8.6450 -1.7111 17 14 -0.4185 10.4505 -0.5031 18 1 0.2761 11.2017 -1.5795 19 1 -1.6108 11.2148 -0.0564 20 1 0.5058 10.2605 0.6436 21 7 1.3187 2.3140 0.0000 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 4.0230 0.3694 -0.0002 26 1 5.1256 2.5944 -0.0019 27 1 3.6996 4.6313 -0.0116 28 1 1.5540 5.5739 0.4333 29 1 0.1082 4.5474 0.5893 30 1 1.0973 4.6630 -2.1205 31 1 -2.7316 9.4084 -1.7850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995745.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = -124.966652 kcal Electronic energy + Delta-G solvation = -18538.109234 eV Core-core repulsion = 15331.191313 eV Total energy + Delta-G solvation = -3206.917921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64384 -39.07525 -37.41987 -36.16529 -36.09415 -35.13999 -33.36733 -31.70257 -28.53011 -28.24328 -26.81818 -23.92296 -23.14911 -21.06485 -19.39976 -19.22413 -18.37316 -17.86715 -17.05269 -16.99858 -16.88566 -16.62482 -15.95938 -15.41146 -15.38546 -14.83761 -14.31513 -14.27487 -13.96789 -13.73618 -13.28209 -13.06176 -12.97992 -12.72998 -12.51733 -12.43973 -12.42656 -12.26217 -12.10346 -11.22149 -11.01497 -10.87443 -10.59687 -10.26111 -9.48769 -8.73166 -7.46687 -0.03561 0.34144 0.46671 1.38477 1.38926 1.55207 2.14643 2.23844 2.60897 2.68414 3.06335 3.11475 3.73881 3.77391 4.09914 4.16855 4.31205 4.38188 4.41197 4.48172 4.52321 4.61723 4.75676 4.77712 4.99447 5.09540 5.24322 5.31653 5.52335 5.92648 6.21253 6.28210 6.80304 6.89132 8.23643 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.030009 B = 0.004956 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.832782 B = 5648.007364 C = 6196.162141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.317 6.317 3 C 0.291 3.709 4 C -0.185 4.185 5 C -0.031 4.031 6 C -0.186 4.186 7 C 0.139 3.861 8 C 0.170 3.830 9 N -1.115 6.115 10 S 2.719 3.281 11 O -1.045 7.045 12 O -1.044 7.044 13 C -1.034 5.034 14 H 0.129 0.871 15 C 0.067 3.933 16 N -0.897 5.897 17 Si 0.995 3.005 18 H -0.256 1.256 19 H -0.267 1.267 20 H -0.242 1.242 21 N -0.558 5.558 22 H 0.043 0.957 23 H 0.127 0.873 24 H 0.050 0.950 25 H 0.167 0.833 26 H 0.187 0.813 27 H 0.167 0.833 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.412 0.588 31 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.423 -10.785 6.107 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.225 6.225 3 C 0.111 3.889 4 C -0.205 4.205 5 C -0.056 4.056 6 C -0.207 4.207 7 C 0.002 3.998 8 C 0.044 3.956 9 N -0.873 5.873 10 S 2.820 3.180 11 O -1.036 7.036 12 O -1.034 7.034 13 C -1.169 5.169 14 H 0.147 0.853 15 C -0.146 4.146 16 N -0.528 5.528 17 Si 0.813 3.187 18 H -0.180 1.180 19 H -0.191 1.191 20 H -0.165 1.165 21 N -0.283 5.283 22 H 0.062 0.938 23 H 0.145 0.855 24 H 0.069 0.931 25 H 0.184 0.816 26 H 0.205 0.795 27 H 0.184 0.816 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.245 0.755 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.486 -11.258 5.791 17.781 hybrid contribution 0.584 0.947 -0.057 1.114 sum 13.070 -10.311 5.733 17.607 Atomic orbital electron populations 1.22966 0.76542 1.04471 1.01670 1.86194 1.23632 1.24510 1.88145 1.20296 0.90636 0.84390 0.93545 1.21491 0.90857 1.01416 1.06775 1.21911 1.02463 0.89695 0.91527 1.22215 0.92535 1.02354 1.03624 1.20859 0.93018 0.90455 0.95476 1.20142 0.98547 0.93945 0.82973 1.55333 1.55807 1.63446 1.12721 0.99937 0.71517 0.74576 0.71927 1.93311 1.86660 1.88299 1.35282 1.93305 1.54691 1.84329 1.71030 1.30856 1.13871 1.16211 1.55915 0.85265 1.26093 0.92537 1.05786 0.90152 1.70010 1.09100 1.35992 1.37711 0.85058 0.79255 0.74528 0.79857 1.17975 1.19125 1.16501 1.66996 1.42670 0.99314 1.19345 0.93779 0.85461 0.93077 0.81558 0.79537 0.81581 0.87497 0.91292 0.75492 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 10.38 113.37 1.18 2.08 16 2 O -0.32 -8.29 10.48 -89.90 -0.94 -9.23 16 3 C 0.29 7.96 7.49 84.79 0.63 8.60 16 4 C -0.18 -3.61 10.04 22.47 0.23 -3.39 16 5 C -0.03 -0.49 10.17 22.45 0.23 -0.26 16 6 C -0.19 -3.90 9.71 22.37 0.22 -3.68 16 7 C 0.14 4.10 6.17 42.50 0.26 4.37 16 8 C 0.17 5.88 6.53 85.64 0.56 6.44 16 9 N -1.11 -45.11 5.99 -190.78 -1.14 -46.26 16 10 S 2.72 147.58 5.02 -56.49 -0.28 147.30 16 11 O -1.05 -63.54 18.02 -128.00 -2.31 -65.85 16 12 O -1.04 -63.67 17.49 -128.00 -2.24 -65.91 16 13 C -1.03 -55.54 9.72 67.73 0.66 -54.88 16 14 H 0.13 6.01 7.81 -2.91 -0.02 5.99 16 15 C 0.07 3.67 5.46 84.65 0.46 4.14 16 16 N -0.90 -53.57 13.19 21.45 0.28 -53.29 16 17 Si 1.00 40.30 29.54 68.60 2.03 42.32 16 18 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 20 H -0.24 -8.93 7.11 99.48 0.71 -8.22 16 21 N -0.56 -18.02 9.13 -296.99 -2.71 -20.73 16 22 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 23 H 0.13 2.02 8.14 -2.39 -0.02 2.01 16 24 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 25 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 26 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 27 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.11 3.06 8.04 -2.38 -0.02 3.04 16 29 H 0.07 2.68 7.75 -2.39 -0.02 2.66 16 30 H 0.41 14.95 8.64 -96.74 -0.84 14.11 16 31 H 0.30 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -81.03 294.93 -2.56 -83.59 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.33 Total: 24.64 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 4.43 Total: -36.60 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -3.57 Total: -120.27 kcal Atomic # 8 Polarization: -135.50 SS G_CDS: -5.49 Total: -140.99 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 147.58 SS G_CDS: -0.28 Total: 147.30 kcal Total: -81.03 -2.56 -83.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995745.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.372 kcal (2) G-P(sol) polarization free energy of solvation -81.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds