Wall clock time and date at job start Mon Mar 30 2020 01:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47375 * 240.00657 * 3 2 1 5 5 H 1.48504 * 109.46772 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47146 * 119.99998 * 3 2 1 7 7 C 1.37884 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99534 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40134 * 66.46140 * 9 7 2 11 11 O 1.42098 * 106.40114 * 293.54121 * 9 7 2 12 12 N 1.65598 * 107.21447 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00089 * 65.00216 * 12 9 7 14 14 H 1.09001 * 109.46954 * 334.99867 * 13 12 9 15 15 C 1.52999 * 109.47016 * 94.99579 * 13 12 9 16 16 O 1.42901 * 109.47238 * 65.00352 * 15 13 12 17 17 C 1.50702 * 109.47146 * 214.99827 * 13 12 9 18 18 C 1.38650 * 120.78879 * 319.97465 * 17 13 12 19 19 C 1.38203 * 119.16168 * 180.02562 * 18 17 13 20 20 N 1.31874 * 120.76322 * 359.97438 * 19 18 17 21 21 C 1.31870 * 121.72652 * 0.02562 * 20 19 18 22 22 C 1.38200 * 120.76264 * 0.02562 * 21 20 19 23 23 H 0.96999 * 120.00149 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00324 * 244.99582 * 12 9 7 25 25 H 1.08998 * 109.46809 * 184.99950 * 15 13 12 26 26 H 1.08998 * 109.47252 * 305.00215 * 15 13 12 27 27 H 0.96696 * 114.00465 * 179.97438 * 16 15 13 28 28 H 1.08002 * 120.42196 * 0.04097 * 18 17 13 29 29 H 1.07996 * 119.61854 * 180.25810 * 19 18 17 30 30 H 1.08001 * 119.61693 * 179.97438 * 21 20 19 31 31 H 1.08004 * 120.42054 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9353 -0.0019 13 6 3.1403 -4.1093 1.1472 14 1 3.2472 -3.1595 1.6712 15 6 2.5498 -5.1526 2.0978 16 8 2.5178 -6.4250 1.4481 17 6 4.4917 -4.5737 0.6684 18 6 4.6013 -5.5055 -0.3524 19 6 5.8574 -5.9081 -0.7648 20 7 6.9427 -5.4163 -0.1996 21 6 6.8764 -4.5288 0.7735 22 6 5.6549 -4.0801 1.2390 23 1 -0.4850 0.8400 0.0004 24 1 2.3166 -4.5322 -0.7636 25 1 3.1666 -5.2178 2.9941 26 1 1.5368 -4.8602 2.3742 27 1 2.1547 -7.1361 1.9935 28 1 3.7162 -5.9114 -0.8197 29 1 5.9514 -6.6304 -1.5621 30 1 7.7871 -4.1489 1.2124 31 1 5.6071 -3.3534 2.0365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192996608.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:12 Heat of formation + Delta-G solvation = -106.639078 kcal Electronic energy + Delta-G solvation = -19171.271393 eV Core-core repulsion = 15965.148215 eV Total energy + Delta-G solvation = -3206.123178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12294 -37.33114 -35.26468 -34.72560 -34.01212 -33.14518 -31.59915 -30.98504 -27.98534 -26.19152 -23.85005 -23.31710 -20.94119 -19.16480 -17.85508 -17.07397 -17.00004 -16.18695 -15.72054 -15.45902 -15.20353 -14.85362 -14.33308 -13.95076 -13.85138 -13.53234 -13.39799 -13.01642 -12.40326 -12.07006 -11.60630 -11.37422 -11.32085 -11.23629 -10.66465 -10.58256 -10.36097 -10.27637 -9.82667 -9.46606 -9.38456 -9.28498 -9.08306 -8.98322 -8.61724 -6.75181 -5.38239 1.28843 1.39431 2.26938 3.05031 3.10021 3.15451 3.93663 4.02858 4.39540 4.56902 4.57917 4.60019 4.73166 4.96671 5.25743 5.33387 5.37664 5.50833 5.63433 5.75189 5.78355 5.91166 5.95746 6.17700 6.32883 6.52830 6.78766 6.85340 7.26965 7.74275 7.81733 7.91306 8.08396 8.83732 10.19046 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.007092 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.108881 B = 3947.036319 C = 4732.541467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.134 3.866 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.024 5.024 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.004 7.004 11 O -1.005 7.005 12 N -1.123 6.123 13 C 0.202 3.798 14 H 0.114 0.886 15 C 0.061 3.939 16 O -0.566 6.566 17 C -0.031 4.031 18 C -0.137 4.137 19 C 0.090 3.910 20 N -0.493 5.493 21 C 0.092 3.908 22 C -0.168 4.168 23 H 0.292 0.708 24 H 0.405 0.595 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.374 0.626 28 H 0.137 0.863 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.291 -8.570 4.034 13.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.157 5.157 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.994 6.994 11 O -0.995 6.995 12 N -0.877 5.877 13 C 0.093 3.907 14 H 0.131 0.869 15 C -0.019 4.019 16 O -0.371 6.371 17 C -0.040 4.040 18 C -0.157 4.157 19 C -0.066 4.066 20 N -0.202 5.202 21 C -0.065 4.065 22 C -0.188 4.188 23 H 0.102 0.898 24 H 0.237 0.763 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.220 0.780 28 H 0.155 0.845 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.205 -8.429 3.412 12.940 hybrid contribution -0.067 0.999 0.455 1.100 sum 9.138 -7.430 3.867 12.396 Atomic orbital electron populations 1.69880 1.06785 1.30916 1.39787 1.24732 0.94449 1.00792 0.88451 0.86214 0.79914 0.79708 0.79834 1.18839 1.20067 1.18809 1.30534 1.06049 1.11856 1.67243 0.88005 1.00489 0.72081 0.73113 0.72939 1.93380 1.72947 1.87531 1.45567 1.93355 1.72793 1.87517 1.45866 1.56104 1.54705 1.50938 1.25929 1.19625 0.85629 0.98158 0.87328 0.86877 1.22804 1.01256 0.83874 0.93940 1.86463 1.87083 1.18561 1.44968 1.20408 0.95000 0.94231 0.94398 1.21937 0.99160 0.97247 0.97362 1.22695 0.87881 0.97914 0.98142 1.67618 1.33135 1.10284 1.09168 1.22633 0.97178 0.93520 0.93206 1.22067 0.93000 1.01732 1.02043 0.89761 0.76301 0.93217 0.90885 0.77984 0.84512 0.83053 0.83027 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.40 13.19 55.43 0.73 -23.67 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -1.02 -27.35 9.58 30.60 0.29 -27.06 16 8 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 9 S 2.71 69.63 4.93 -107.50 -0.53 69.10 16 10 O -1.00 -29.10 18.02 -57.17 -1.03 -30.13 16 11 O -1.01 -27.76 17.23 -57.17 -0.99 -28.75 16 12 N -1.12 -21.77 5.38 -5.88 -0.03 -21.80 16 13 C 0.20 3.33 2.84 -69.08 -0.20 3.13 16 14 H 0.11 1.87 7.75 -51.93 -0.40 1.47 16 15 C 0.06 0.88 6.87 37.16 0.26 1.13 16 16 O -0.57 -7.38 12.12 -35.23 -0.43 -7.81 16 17 C -0.03 -0.46 4.84 -104.32 -0.51 -0.96 16 18 C -0.14 -1.93 8.27 -39.44 -0.33 -2.26 16 19 C 0.09 1.20 11.18 -17.55 -0.20 1.00 16 20 N -0.49 -7.01 10.36 -13.25 -0.14 -7.14 16 21 C 0.09 1.17 11.18 -17.55 -0.20 0.97 16 22 C -0.17 -2.21 9.78 -39.44 -0.39 -2.60 16 23 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.40 7.14 7.17 -34.47 -0.25 6.89 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.18 7.59 -51.93 -0.39 0.79 16 27 H 0.37 3.20 9.12 45.56 0.42 3.61 16 28 H 0.14 1.85 6.73 -52.49 -0.35 1.49 16 29 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -35.87 288.89 -6.65 -42.52 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -2.22 Total: 11.23 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -1.35 Total: -23.07 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.56 Total: -52.62 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -2.44 Total: -66.69 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 69.63 SS G_CDS: -0.53 Total: 69.10 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.87 -6.65 -42.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996608.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.119 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds