Wall clock time and date at job start Mon Mar 30 2020 01:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47375 * 240.00657 * 3 2 1 5 5 H 1.48504 * 109.46772 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47146 * 119.99998 * 3 2 1 7 7 C 1.37884 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99534 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40134 * 66.46140 * 9 7 2 11 11 O 1.42098 * 106.40114 * 293.54121 * 9 7 2 12 12 N 1.65598 * 107.21447 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00089 * 65.00216 * 12 9 7 14 14 H 1.09001 * 109.46954 * 334.99867 * 13 12 9 15 15 C 1.52999 * 109.47016 * 94.99579 * 13 12 9 16 16 O 1.42901 * 109.47238 * 65.00352 * 15 13 12 17 17 C 1.50702 * 109.47146 * 214.99827 * 13 12 9 18 18 C 1.38650 * 120.78879 * 319.97465 * 17 13 12 19 19 C 1.38203 * 119.16168 * 180.02562 * 18 17 13 20 20 N 1.31874 * 120.76322 * 359.97438 * 19 18 17 21 21 C 1.31870 * 121.72652 * 0.02562 * 20 19 18 22 22 C 1.38200 * 120.76264 * 0.02562 * 21 20 19 23 23 H 0.96999 * 120.00149 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00324 * 244.99582 * 12 9 7 25 25 H 1.08998 * 109.46809 * 184.99950 * 15 13 12 26 26 H 1.08998 * 109.47252 * 305.00215 * 15 13 12 27 27 H 0.96696 * 114.00465 * 179.97438 * 16 15 13 28 28 H 1.08002 * 120.42196 * 0.04097 * 18 17 13 29 29 H 1.07996 * 119.61854 * 180.25810 * 19 18 17 30 30 H 1.08001 * 119.61693 * 179.97438 * 21 20 19 31 31 H 1.08004 * 120.42054 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9353 -0.0019 13 6 3.1403 -4.1093 1.1472 14 1 3.2472 -3.1595 1.6712 15 6 2.5498 -5.1526 2.0978 16 8 2.5178 -6.4250 1.4481 17 6 4.4917 -4.5737 0.6684 18 6 4.6013 -5.5055 -0.3524 19 6 5.8574 -5.9081 -0.7648 20 7 6.9427 -5.4163 -0.1996 21 6 6.8764 -4.5288 0.7735 22 6 5.6549 -4.0801 1.2390 23 1 -0.4850 0.8400 0.0004 24 1 2.3166 -4.5322 -0.7636 25 1 3.1666 -5.2178 2.9941 26 1 1.5368 -4.8602 2.3742 27 1 2.1547 -7.1361 1.9935 28 1 3.7162 -5.9114 -0.8197 29 1 5.9514 -6.6304 -1.5621 30 1 7.7871 -4.1489 1.2124 31 1 5.6071 -3.3534 2.0365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192996608.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:11 Heat of formation + Delta-G solvation = -138.327752 kcal Electronic energy + Delta-G solvation = -19172.645517 eV Core-core repulsion = 15965.148215 eV Total energy + Delta-G solvation = -3207.497302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17555 -38.50075 -37.36922 -36.14985 -35.96341 -35.18893 -32.83444 -32.01122 -29.25225 -28.27424 -24.95898 -24.34233 -22.14152 -21.09541 -19.46789 -18.70410 -18.21074 -17.88090 -17.03582 -16.73455 -16.49573 -16.33783 -15.95828 -15.63064 -15.24114 -14.77905 -14.44448 -14.26357 -13.99090 -13.70891 -13.34969 -13.00536 -12.75993 -12.53737 -12.45955 -12.40593 -12.38276 -12.32795 -11.24300 -11.08715 -10.93982 -10.58431 -10.45355 -10.17060 -9.98358 -8.76588 -7.50045 0.19681 0.30879 0.43559 1.34444 1.35893 1.48931 2.19942 2.57440 2.84007 3.01379 3.32773 3.53367 3.67010 3.72865 3.90018 4.18770 4.28600 4.32315 4.34282 4.44620 4.57456 4.74623 4.80560 4.93977 5.01666 5.14410 5.27139 5.53084 5.84377 5.88070 6.27527 6.77373 6.92956 7.08159 8.19746 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.007092 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.108881 B = 3947.036319 C = 4732.541467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.245 1.245 7 C -1.041 5.041 8 H 0.120 0.880 9 S 2.722 3.278 10 O -1.047 7.047 11 O -1.034 7.034 12 N -1.110 6.110 13 C 0.191 3.809 14 H 0.110 0.890 15 C 0.066 3.934 16 O -0.574 6.574 17 C -0.044 4.044 18 C -0.147 4.147 19 C 0.087 3.913 20 N -0.510 5.510 21 C 0.090 3.910 22 C -0.170 4.170 23 H 0.299 0.701 24 H 0.413 0.587 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.394 0.606 28 H 0.137 0.863 29 H 0.175 0.825 30 H 0.183 0.817 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -8.270 4.633 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.168 1.168 7 C -1.175 5.175 8 H 0.138 0.862 9 S 2.823 3.177 10 O -1.037 7.037 11 O -1.023 7.023 12 N -0.868 5.868 13 C 0.083 3.917 14 H 0.128 0.872 15 C -0.014 4.014 16 O -0.382 6.382 17 C -0.054 4.054 18 C -0.167 4.167 19 C -0.069 4.069 20 N -0.219 5.219 21 C -0.066 4.066 22 C -0.190 4.190 23 H 0.109 0.891 24 H 0.247 0.753 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.243 0.757 28 H 0.155 0.845 29 H 0.192 0.808 30 H 0.200 0.800 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.580 -8.172 4.022 14.733 hybrid contribution -0.763 0.780 0.285 1.128 sum 10.817 -7.392 4.307 13.791 Atomic orbital electron populations 1.69977 1.08754 1.32437 1.41230 1.25971 0.95316 1.05250 0.87521 0.85213 0.78850 0.74681 0.80808 1.17906 1.18893 1.16789 1.30882 1.07148 1.12502 1.66929 0.86170 0.99892 0.72492 0.73707 0.71618 1.93313 1.74849 1.88366 1.47177 1.93310 1.74239 1.88142 1.46655 1.55492 1.54335 1.49497 1.27456 1.19891 0.86304 0.99023 0.86467 0.87241 1.22644 1.00342 0.84014 0.94427 1.86416 1.87313 1.18621 1.45821 1.20330 0.94442 0.95209 0.95406 1.22012 0.99667 0.97521 0.97543 1.23057 0.87343 0.98045 0.98450 1.67690 1.33470 1.10939 1.09844 1.23147 0.98205 0.92722 0.92533 1.22329 0.92467 1.01829 1.02384 0.89061 0.75255 0.90062 0.93254 0.75653 0.84542 0.80787 0.80036 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.40 13.19 21.45 0.28 -52.11 16 2 C 0.07 3.95 5.46 84.66 0.46 4.42 16 3 Si 0.99 40.23 29.54 68.60 2.03 42.25 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.24 -9.15 7.11 99.48 0.71 -8.44 16 7 C -1.04 -55.58 9.58 67.74 0.65 -54.93 16 8 H 0.12 5.74 7.81 -2.91 -0.02 5.72 16 9 S 2.72 142.49 4.93 -56.49 -0.28 142.21 16 10 O -1.05 -62.53 18.02 -128.00 -2.31 -64.83 16 11 O -1.03 -58.62 17.23 -128.00 -2.21 -60.83 16 12 N -1.11 -43.13 5.38 -172.51 -0.93 -44.06 16 13 C 0.19 6.13 2.84 44.24 0.13 6.26 16 14 H 0.11 3.54 7.75 -2.39 -0.02 3.52 16 15 C 0.07 1.82 6.87 71.98 0.49 2.32 16 16 O -0.57 -14.21 12.12 -148.98 -1.81 -16.01 16 17 C -0.04 -1.24 4.84 -19.67 -0.10 -1.33 16 18 C -0.15 -3.94 8.27 22.36 0.18 -3.76 16 19 C 0.09 2.15 11.18 84.68 0.95 3.09 16 20 N -0.51 -13.26 10.36 -195.85 -2.03 -15.28 16 21 C 0.09 2.05 11.18 84.68 0.95 2.99 16 22 C -0.17 -4.03 9.78 22.36 0.22 -3.81 16 23 H 0.30 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.41 14.64 7.17 -96.74 -0.69 13.95 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.60 7.59 -2.39 -0.02 1.58 16 27 H 0.39 6.09 9.12 -74.06 -0.68 5.41 16 28 H 0.14 3.56 6.73 -2.91 -0.02 3.54 16 29 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 30 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -77.62 288.89 -3.50 -81.11 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.19 Total: 32.31 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 3.93 Total: -44.76 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -2.67 Total: -111.45 kcal Atomic # 8 Polarization: -135.35 SS G_CDS: -6.32 Total: -141.67 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 16 Polarization: 142.49 SS G_CDS: -0.28 Total: 142.21 kcal Total: -77.62 -3.50 -81.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996608.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.213 kcal (2) G-P(sol) polarization free energy of solvation -77.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds