Wall clock time and date at job start Mon Mar 30 2020 01:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47156 * 300.00078 * 3 2 1 6 6 H 1.48498 * 109.47350 * 60.00148 * 3 2 1 7 7 C 1.37873 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00060 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00352 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40165 * 66.45743 * 9 7 2 11 11 O 1.42093 * 106.40035 * 293.54011 * 9 7 2 12 12 N 1.65592 * 107.22119 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00009 * 64.99979 * 12 9 7 14 14 C 1.52996 * 109.47309 * 165.00006 * 13 12 9 15 15 H 1.08998 * 109.47086 * 60.00050 * 14 13 12 16 16 O 1.42904 * 109.47076 * 300.00105 * 14 13 12 17 17 C 1.50703 * 109.47050 * 180.02562 * 14 13 12 18 18 C 1.38651 * 120.78915 * 84.97760 * 17 14 13 19 19 C 1.38203 * 119.16168 * 179.97438 * 18 17 14 20 20 N 1.31874 * 120.76322 * 0.02562 * 19 18 17 21 21 C 1.31870 * 121.72652 * 0.02562 * 20 19 18 22 22 C 1.38201 * 120.76299 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99214 * 0.02562 * 1 2 3 24 24 H 0.96998 * 120.00575 * 244.99740 * 12 9 7 25 25 H 1.08998 * 109.47006 * 45.00007 * 13 12 9 26 26 H 1.08999 * 109.47250 * 285.00100 * 13 12 9 27 27 H 0.96703 * 114.00002 * 300.00145 * 16 14 13 28 28 H 1.08002 * 120.42195 * 0.04071 * 18 17 14 29 29 H 1.07996 * 119.61854 * 180.30069 * 19 18 17 30 30 H 1.08001 * 119.61693 * 179.97438 * 21 20 19 31 31 H 1.07997 * 120.41815 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0005 13 6 3.1392 -4.1089 1.1504 14 6 3.8045 -5.4847 1.0771 15 1 4.3816 -5.5606 0.1556 16 8 2.8001 -6.5011 1.0952 17 6 4.7206 -5.6633 2.2603 18 6 4.2307 -6.1187 3.4749 19 6 5.1010 -6.2707 4.5377 20 7 6.3823 -5.9878 4.4061 21 6 6.8827 -5.5518 3.2666 22 6 6.0732 -5.3753 2.1606 23 1 -0.4849 0.8401 -0.0004 24 1 2.3170 -4.5326 -0.7607 25 1 2.5621 -4.0330 2.0720 26 1 3.9053 -3.3337 1.1367 27 1 2.2470 -6.4934 1.8885 28 1 3.1825 -6.3526 3.5887 29 1 4.7282 -6.6295 5.4856 30 1 7.9374 -5.3301 3.1970 31 1 6.4890 -5.0183 1.2300 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193005002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:07 Heat of formation + Delta-G solvation = -110.461471 kcal Electronic energy + Delta-G solvation = -18606.863206 eV Core-core repulsion = 15400.574277 eV Total energy + Delta-G solvation = -3206.288929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47093 -37.76372 -35.24170 -33.99483 -33.91144 -33.10890 -32.74571 -31.34219 -27.92302 -26.16817 -23.87650 -23.58142 -21.61171 -19.05703 -17.99105 -17.41005 -16.67531 -16.47616 -15.90115 -15.68113 -14.94464 -14.88780 -14.70089 -14.05130 -13.99958 -13.75675 -13.54818 -13.30201 -12.57114 -12.03598 -11.86500 -11.50715 -11.28232 -11.26353 -10.80343 -10.61909 -10.34830 -10.32128 -10.23027 -9.69652 -9.54068 -9.31690 -9.29122 -9.08130 -8.54453 -6.73743 -5.35957 0.97499 1.03243 2.29623 3.02773 3.11364 3.17787 3.63127 4.01868 4.26199 4.28443 4.32256 4.60649 4.61195 4.75762 4.90034 4.97684 5.06520 5.18356 5.43718 5.58857 5.71682 5.76894 5.86955 5.90746 6.19244 6.42010 6.51683 6.75691 7.28354 7.48292 7.80229 7.85539 7.93933 8.85579 10.20495 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.005296 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.153931 B = 5285.711499 C = 5988.380206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.022 5.022 8 H 0.102 0.898 9 S 2.717 3.283 10 O -1.005 7.005 11 O -1.008 7.008 12 N -1.131 6.131 13 C 0.102 3.898 14 C 0.139 3.861 15 H 0.118 0.882 16 O -0.547 6.547 17 C -0.067 4.067 18 C -0.163 4.163 19 C 0.101 3.899 20 N -0.489 5.489 21 C 0.099 3.901 22 C -0.162 4.162 23 H 0.291 0.709 24 H 0.405 0.595 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.377 0.623 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.147 -9.525 5.081 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.155 5.155 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.995 6.995 11 O -0.998 6.998 12 N -0.886 5.886 13 C -0.026 4.026 14 C 0.078 3.922 15 H 0.136 0.864 16 O -0.353 6.353 17 C -0.076 4.076 18 C -0.183 4.183 19 C -0.056 4.056 20 N -0.198 5.198 21 C -0.058 4.058 22 C -0.182 4.182 23 H 0.101 0.899 24 H 0.237 0.763 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.226 0.774 28 H 0.154 0.846 29 H 0.174 0.826 30 H 0.174 0.826 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.816 -9.718 5.395 15.509 hybrid contribution 0.285 1.328 -0.497 1.447 sum 11.101 -8.390 4.898 14.752 Atomic orbital electron populations 1.69908 1.06775 1.30660 1.40058 1.24750 0.94471 1.00855 0.88493 0.86134 0.80395 0.80437 0.78604 1.18663 1.19564 1.19598 1.30578 1.06082 1.11922 1.66908 0.88003 1.00374 0.72035 0.73151 0.72822 1.93379 1.72996 1.87589 1.45550 1.93349 1.72839 1.87531 1.46068 1.55895 1.55559 1.51083 1.26068 1.21661 0.94398 0.95910 0.90606 1.21139 0.87474 0.87839 0.95701 0.86430 1.86612 1.47941 1.53858 1.46881 1.21026 0.95132 0.95462 0.96022 1.21954 1.01725 1.01172 0.93434 1.22739 0.88764 0.95484 0.98580 1.67675 1.14923 1.11218 1.26001 1.22759 1.00327 0.94667 0.88051 1.22034 0.93620 1.01519 1.01003 0.89905 0.76311 0.90231 0.91056 0.77394 0.84587 0.82602 0.82649 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.60 13.19 55.43 0.73 -23.87 16 2 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 3 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -1.02 -27.49 9.72 30.60 0.30 -27.19 16 8 H 0.10 2.49 7.81 -52.48 -0.41 2.08 16 9 S 2.72 70.13 5.02 -107.50 -0.54 69.59 16 10 O -1.00 -29.10 18.02 -57.17 -1.03 -30.13 16 11 O -1.01 -28.62 17.49 -57.17 -1.00 -29.62 16 12 N -1.13 -21.28 5.86 -10.61 -0.06 -21.34 16 13 C 0.10 1.59 5.87 -4.04 -0.02 1.57 16 14 C 0.14 1.69 3.33 -27.88 -0.09 1.60 16 15 H 0.12 1.29 8.07 -51.93 -0.42 0.87 16 16 O -0.55 -6.91 13.01 -35.23 -0.46 -7.37 16 17 C -0.07 -0.75 5.03 -104.32 -0.53 -1.28 16 18 C -0.16 -1.70 9.41 -39.44 -0.37 -2.07 16 19 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 20 N -0.49 -5.79 10.36 -13.25 -0.14 -5.92 16 21 C 0.10 1.01 11.18 -17.55 -0.20 0.82 16 22 C -0.16 -1.64 9.80 -39.44 -0.39 -2.02 16 23 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.41 6.77 8.65 -34.47 -0.30 6.48 16 25 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.38 3.80 7.48 45.56 0.34 4.14 16 28 H 0.14 1.13 6.73 -52.49 -0.35 0.77 16 29 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 291.94 15.07 4.40 4.40 Total: -1.00 -36.67 291.94 -7.08 -43.75 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -2.37 Total: 9.40 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -1.59 Total: -24.17 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.53 Total: -51.14 kcal Atomic # 8 Polarization: -64.63 SS G_CDS: -2.49 Total: -67.12 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 70.13 SS G_CDS: -0.54 Total: 69.59 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -36.67 -7.08 -43.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193005002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.711 kcal (2) G-P(sol) polarization free energy of solvation -36.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds