Wall clock time and date at job start Mon Mar 30 2020 01:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.37044 * 119.99523 * 2 1 4 4 H 1.08000 * 119.99827 * 208.75310 * 3 2 1 5 5 C 1.38887 * 120.00244 * 28.75208 * 3 2 1 6 6 N 1.31481 * 119.99830 * 8.16554 * 5 3 2 7 7 Si 1.86798 * 119.99960 * 188.16317 * 5 3 2 8 8 H 1.48493 * 109.47275 * 90.00040 * 7 5 3 9 9 H 1.48502 * 109.46915 * 210.00246 * 7 5 3 10 10 H 1.48503 * 109.47058 * 329.99797 * 7 5 3 11 11 C 1.34770 * 120.00206 * 179.97438 * 2 1 3 12 12 S 1.71198 * 120.00112 * 179.97438 * 11 2 1 13 13 N 1.34773 * 120.00030 * 0.02562 * 11 2 1 14 14 C 1.39964 * 120.00018 * 184.12121 * 13 11 2 15 15 C 1.38882 * 120.03989 * 315.66705 * 14 13 11 16 16 C 1.38125 * 119.99846 * 180.02562 * 15 14 13 17 17 C 1.38430 * 120.07276 * 0.02562 * 16 15 14 18 18 F 1.35102 * 119.96680 * 180.27837 * 17 16 15 19 19 C 1.38670 * 120.07079 * 0.02562 * 17 16 15 20 20 F 1.35104 * 119.99889 * 179.97438 * 19 17 16 21 21 C 1.38319 * 120.00608 * 359.97438 * 19 17 16 22 22 H 1.09002 * 109.47073 * 264.45401 * 1 2 3 23 23 H 1.08996 * 109.47062 * 24.45578 * 1 2 3 24 24 H 1.08997 * 109.46737 * 144.45099 * 1 2 3 25 25 H 0.96999 * 119.99423 * 180.02562 * 6 5 3 26 26 H 0.97007 * 120.00453 * 4.12474 * 13 11 2 27 27 H 1.08003 * 119.99949 * 0.03903 * 15 14 13 28 28 H 1.08000 * 119.96543 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.03798 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1502 1.1869 0.0000 4 1 3.1303 1.2446 -0.4499 5 6 1.5842 2.3155 0.5786 6 7 0.4677 2.2125 1.2653 7 14 2.4091 3.9798 0.3811 8 1 1.8888 4.6486 -0.8384 9 1 2.1174 4.8210 1.5696 10 1 3.8769 3.7929 0.2552 11 6 2.1390 -1.1671 0.0005 12 16 3.8510 -1.1671 -0.0001 13 7 1.4652 -2.3343 0.0005 14 6 2.1623 -3.5448 0.0882 15 6 3.3050 -3.7459 -0.6752 16 6 3.9919 -4.9410 -0.5884 17 6 3.5426 -5.9396 0.2585 18 9 4.2193 -7.1056 0.3459 19 6 2.4014 -5.7423 1.0212 20 9 1.9638 -6.7181 1.8470 21 6 1.7110 -4.5467 0.9368 22 1 -0.3633 -0.0993 1.0229 23 1 -0.3633 0.9354 -0.4254 24 1 -0.3633 -0.8361 -0.5975 25 1 0.0722 3.0008 1.6690 26 1 0.4970 -2.3355 -0.0603 27 1 3.6565 -2.9677 -1.3365 28 1 4.8807 -5.0967 -1.1819 29 1 0.8224 -4.3924 1.5309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200694857.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:43 Heat of formation + Delta-G solvation = -47.549129 kcal Electronic energy + Delta-G solvation = -18064.521600 eV Core-core repulsion = 14749.873239 eV Total energy + Delta-G solvation = -3314.648361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.41813 -49.49631 -41.03469 -39.44121 -36.48818 -34.04127 -31.87152 -30.15158 -29.17598 -27.25443 -24.48657 -23.90862 -22.42106 -20.55648 -19.30312 -18.91402 -18.42297 -17.88981 -17.29933 -17.14278 -16.81190 -15.99639 -15.92700 -15.76555 -15.49836 -15.32788 -14.93847 -14.36340 -13.78262 -13.73522 -13.45970 -13.30388 -12.94447 -12.73673 -12.57345 -12.31392 -12.14775 -11.91176 -11.29093 -10.51665 -10.03025 -9.33717 -8.81091 -8.64797 -7.89474 -6.33550 -0.13773 0.11196 0.75008 1.33429 1.45258 1.50937 1.55761 1.99272 2.25698 2.50587 2.77442 2.82580 2.93333 3.38353 3.70270 4.07493 4.12090 4.17451 4.38712 4.60284 4.76874 4.89333 4.97396 5.21391 5.24286 5.28480 5.44159 5.57472 5.91204 6.26928 6.36601 6.87975 7.01349 8.26549 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.038562 B = 0.004697 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.934093 B = 5960.046572 C = 6417.391251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.349 5.349 3 C -0.321 4.321 4 H 0.109 0.891 5 C 0.017 3.983 6 N -0.863 5.863 7 Si 1.003 2.997 8 H -0.256 1.256 9 H -0.270 1.270 10 H -0.273 1.273 11 C 0.452 3.548 12 S -0.799 6.799 13 N -0.641 5.641 14 C 0.171 3.829 15 C -0.064 4.064 16 C -0.116 4.116 17 C 0.049 3.951 18 F -0.138 7.138 19 C 0.062 3.938 20 F -0.135 7.135 21 C -0.139 4.139 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.289 0.711 26 H 0.415 0.585 27 H 0.148 0.852 28 H 0.164 0.836 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 -7.709 -2.939 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.031 5.031 3 C -0.453 4.453 4 H 0.126 0.874 5 C -0.192 4.192 6 N -0.495 5.495 7 Si 0.824 3.176 8 H -0.180 1.180 9 H -0.194 1.194 10 H -0.198 1.198 11 C 0.091 3.909 12 S -0.666 6.666 13 N -0.275 5.275 14 C 0.074 3.926 15 C -0.088 4.088 16 C -0.137 4.137 17 C 0.028 3.972 18 F -0.116 7.116 19 C 0.041 3.959 20 F -0.114 7.114 21 C -0.161 4.161 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.257 0.743 27 H 0.165 0.835 28 H 0.181 0.819 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.193 -7.369 -2.761 8.917 hybrid contribution -0.865 0.445 0.365 1.039 sum -5.058 -6.924 -2.397 8.903 Atomic orbital electron populations 1.22099 0.77810 1.03287 1.02813 1.43164 1.07182 1.03271 1.49434 1.20382 1.04331 0.83773 1.36826 0.87378 1.26377 0.96347 1.03597 0.92831 1.69994 1.18367 1.33177 1.28005 0.84759 0.78638 0.75301 0.78885 1.18023 1.19449 1.19778 1.21058 0.92685 0.81801 0.95351 1.92521 0.96687 1.93597 1.83756 1.41404 1.09136 1.01122 1.75824 1.17184 0.95021 0.84463 0.95902 1.21621 0.93524 0.95227 0.98427 1.20978 1.02118 0.91069 0.99553 1.17728 0.93213 0.84261 1.01968 1.91475 1.79016 1.45703 1.95435 1.17174 0.95745 0.87833 0.95187 1.91487 1.89119 1.60837 1.69932 1.20753 1.03667 0.91803 0.99906 0.91016 0.89595 0.90240 0.90057 0.74326 0.83494 0.81877 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.94 8.36 127.77 1.07 4.01 15 2 N -0.35 -15.35 3.00 -546.66 -1.64 -16.99 15 3 C -0.32 -15.70 8.87 84.03 0.75 -14.96 15 4 H 0.11 5.81 6.79 -2.91 -0.02 5.79 15 5 C 0.02 0.79 5.12 84.90 0.43 1.22 15 6 N -0.86 -38.33 10.88 21.66 0.24 -38.10 15 7 Si 1.00 37.05 29.56 68.60 2.03 39.07 15 8 H -0.26 -8.81 7.11 99.48 0.71 -8.11 15 9 H -0.27 -9.58 7.11 99.48 0.71 -8.87 15 10 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 11 C 0.45 19.79 7.52 179.06 1.35 21.14 15 12 S -0.80 -41.15 24.35 -56.49 -1.38 -42.53 15 13 N -0.64 -21.60 5.20 -189.97 -0.99 -22.58 15 14 C 0.17 5.54 5.96 38.14 0.23 5.77 15 15 C -0.06 -2.14 7.87 22.40 0.18 -1.97 15 16 C -0.12 -3.38 10.02 22.29 0.22 -3.15 15 17 C 0.05 1.45 7.30 22.42 0.16 1.62 15 18 F -0.14 -4.06 17.18 44.97 0.77 -3.29 15 19 C 0.06 1.81 7.30 22.39 0.16 1.97 15 20 F -0.14 -3.92 17.18 44.97 0.77 -3.15 15 21 C -0.14 -3.89 9.95 22.43 0.22 -3.67 15 22 H 0.07 2.55 7.83 -2.39 -0.02 2.54 15 23 H 0.09 3.16 6.90 -2.39 -0.02 3.15 15 24 H 0.08 2.06 6.61 -2.39 -0.02 2.04 15 25 H 0.29 11.92 8.31 -92.71 -0.77 11.15 15 26 H 0.42 10.92 6.64 -92.70 -0.62 10.30 15 27 H 0.15 5.68 5.98 -9.95 -0.06 5.62 15 28 H 0.16 3.97 8.06 -2.91 -0.02 3.95 15 29 H 0.16 3.74 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -59.52 272.10 5.14 -54.38 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.56 Total: 21.21 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.77 Total: 11.97 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.39 Total: -77.67 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.55 Total: -6.44 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: -41.15 SS G_CDS: -1.38 Total: -42.53 kcal Total: -59.52 5.14 -54.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200694857.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.833 kcal (2) G-P(sol) polarization free energy of solvation -59.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds