Wall clock time and date at job start Mon Mar 30 2020 01:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00149 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99997 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00032 * 3 2 1 7 7 C 1.38628 * 119.99638 * 180.27817 * 2 1 3 8 8 H 1.07998 * 120.00036 * 179.72374 * 7 2 1 9 9 O 1.34924 * 120.00236 * 359.72374 * 7 2 1 10 10 C 1.42908 * 116.99919 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.26755 * 27.92878 * 10 9 7 12 12 C 1.54350 * 110.29886 * 149.99702 * 10 9 7 13 13 C 1.54347 * 102.38745 * 92.58068 * 12 10 9 14 14 C 1.51363 * 105.17386 * 26.34346 * 13 12 10 15 15 C 1.38496 * 130.39371 * 162.81354 * 14 13 12 16 16 C 1.38109 * 120.21561 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.03195 * 180.02562 * 16 15 14 18 18 F 1.39898 * 109.47101 * 90.00115 * 17 16 15 19 19 F 1.39895 * 109.47233 * 210.00362 * 17 16 15 20 20 F 1.39905 * 109.47299 * 330.00381 * 17 16 15 21 21 C 1.38253 * 119.93375 * 0.02562 * 16 15 14 22 22 C 1.38097 * 119.93449 * 359.97438 * 21 16 15 23 23 C 1.38219 * 109.76044 * 342.81011 * 14 13 12 24 24 H 0.97000 * 119.99811 * 179.97438 * 1 2 3 25 25 H 1.09000 * 110.81839 * 210.79939 * 12 10 9 26 26 H 1.08999 * 110.82653 * 334.35340 * 12 10 9 27 27 H 1.09001 * 110.30492 * 145.26623 * 13 12 10 28 28 H 1.09000 * 110.30031 * 267.41917 * 13 12 10 29 29 H 1.07997 * 119.89437 * 0.02562 * 15 14 13 30 30 H 1.08004 * 120.02663 * 179.97438 * 21 16 15 31 31 H 1.08002 * 119.89201 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 1.4001 5 1 3.5474 1.4402 -0.7000 6 1 1.4474 2.6527 -0.7000 7 6 2.0089 -1.2006 -0.0058 8 1 3.0889 -1.2006 -0.0103 9 8 1.3343 -2.3691 -0.0059 10 6 2.1126 -3.5676 -0.0115 11 1 3.0777 -3.3933 0.4642 12 6 1.3556 -4.7011 0.7128 13 6 0.6084 -5.3937 -0.4466 14 6 1.4407 -5.1115 -1.6790 15 6 1.4417 -5.7244 -2.9210 16 6 2.3028 -5.2901 -3.9097 17 6 2.3000 -5.9596 -5.2598 18 9 1.3854 -5.3138 -6.0986 19 9 3.5797 -5.8851 -5.8199 20 9 1.9321 -7.3016 -5.1142 21 6 3.1672 -4.2406 -3.6595 22 6 3.1677 -3.6283 -2.4217 23 6 2.3050 -4.0622 -1.4290 24 1 -0.4850 -0.8401 -0.0004 25 1 2.0531 -5.3893 1.1902 26 1 0.6520 -4.2946 1.4393 27 1 0.5473 -6.4675 -0.2693 28 1 -0.3898 -4.9708 -0.5594 29 1 0.7664 -6.5440 -3.1173 30 1 3.8415 -3.9001 -4.4314 31 1 3.8436 -2.8087 -2.2269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224387621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:31 Heat of formation + Delta-G solvation = -168.675301 kcal Electronic energy + Delta-G solvation = -20652.570527 eV Core-core repulsion = 16869.996909 eV Total energy + Delta-G solvation = -3782.573618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.12822 -47.65699 -47.57877 -40.01719 -36.82091 -34.64409 -31.72062 -31.22479 -29.38510 -26.84388 -25.09816 -23.92749 -22.47782 -20.78373 -20.36350 -18.45158 -18.35745 -18.13367 -17.81222 -15.96212 -15.46778 -15.05127 -14.52300 -14.40908 -14.07748 -14.02692 -13.99074 -13.83924 -13.76246 -13.72360 -13.53969 -13.02496 -12.94855 -12.48907 -11.86991 -11.42839 -11.13917 -10.90238 -10.81052 -10.67386 -10.23071 -10.17986 -9.85289 -9.34418 -8.77058 -8.49848 -8.07981 -6.36910 -3.69992 1.14401 1.47997 2.71186 3.35696 3.41328 3.55489 3.66300 3.77386 4.06852 4.37292 4.49434 4.67600 4.87899 5.01203 5.25395 5.31561 5.38049 5.43008 5.48534 5.69512 5.85640 5.97892 6.06508 6.15743 6.19587 6.34443 6.42482 6.46931 6.59491 6.89364 6.99532 7.59929 8.75114 9.34367 9.94957 11.10310 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.005285 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.977586 B = 5297.211477 C = 5972.862358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.004 4.004 3 Si 1.091 2.909 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.454 4.454 8 H 0.055 0.945 9 O -0.292 6.292 10 C 0.134 3.866 11 H 0.057 0.943 12 C -0.119 4.119 13 C -0.075 4.075 14 C -0.093 4.093 15 C -0.067 4.067 16 C -0.193 4.193 17 C 0.512 3.488 18 F -0.178 7.178 19 F -0.180 7.180 20 F -0.181 7.181 21 C -0.078 4.078 22 C -0.092 4.092 23 C -0.065 4.065 24 H 0.276 0.724 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.331 -12.519 -5.882 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.205 4.205 3 Si 0.918 3.082 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.532 4.532 8 H 0.073 0.927 9 O -0.207 6.207 10 C 0.074 3.926 11 H 0.075 0.925 12 C -0.156 4.156 13 C -0.112 4.112 14 C -0.093 4.093 15 C -0.085 4.085 16 C -0.195 4.195 17 C 0.458 3.542 18 F -0.160 7.160 19 F -0.161 7.161 20 F -0.162 7.162 21 C -0.096 4.096 22 C -0.110 4.110 23 C -0.065 4.065 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.945 -10.888 -5.918 13.342 hybrid contribution 0.519 -1.796 -0.486 1.931 sum 5.464 -12.684 -6.403 15.223 Atomic orbital electron populations 1.70543 1.06279 1.30848 1.47174 1.26051 0.97060 1.00333 0.97009 0.83148 0.73956 0.74258 0.76822 1.21370 1.21560 1.20577 1.21784 0.91301 0.83850 1.56307 0.92670 1.85487 1.31991 1.10683 1.92539 1.21245 0.95051 0.87975 0.88341 0.92534 1.22389 0.99721 0.96209 0.97296 1.21024 0.98879 1.00383 0.90918 1.20582 0.97645 0.96399 0.94673 1.20214 0.97345 0.99374 0.91595 1.19662 1.04605 1.02464 0.92748 1.18300 0.73430 0.76389 0.86044 1.93220 1.67315 1.81421 1.74011 1.93165 1.39791 1.96086 1.87102 1.93165 1.91569 1.35565 1.95930 1.20759 0.97323 0.94081 0.97474 1.20688 0.99294 0.99223 0.91771 1.21823 0.92853 0.93183 0.98670 0.91415 0.90637 0.89403 0.90895 0.89629 0.85418 0.85011 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.36 13.70 55.48 0.76 -27.60 16 2 C 0.00 -0.10 5.49 -17.51 -0.10 -0.20 16 3 Si 1.09 24.99 29.92 -169.99 -5.09 19.90 16 4 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.45 -12.82 9.82 30.88 0.30 -12.52 16 8 H 0.06 1.49 7.63 -52.49 -0.40 1.09 16 9 O -0.29 -7.83 8.87 -16.49 -0.15 -7.97 16 10 C 0.13 2.77 3.39 -26.85 -0.09 2.68 16 11 H 0.06 1.15 7.80 -51.93 -0.41 0.75 16 12 C -0.12 -1.95 6.81 -25.32 -0.17 -2.12 16 13 C -0.08 -1.14 6.77 -26.85 -0.18 -1.32 16 14 C -0.09 -1.58 6.14 -104.21 -0.64 -2.22 16 15 C -0.07 -1.03 9.40 -39.53 -0.37 -1.40 16 16 C -0.19 -2.95 5.45 -104.66 -0.57 -3.52 16 17 C 0.51 7.10 3.36 36.01 0.12 7.23 16 18 F -0.18 -2.60 17.30 2.25 0.04 -2.56 16 19 F -0.18 -2.42 16.47 2.25 0.04 -2.38 16 20 F -0.18 -2.41 16.46 2.25 0.04 -2.37 16 21 C -0.08 -1.22 9.40 -39.63 -0.37 -1.59 16 22 C -0.09 -1.63 10.04 -39.54 -0.40 -2.03 16 23 C -0.06 -1.24 5.81 -104.21 -0.61 -1.84 16 24 H 0.28 8.79 7.97 -40.82 -0.33 8.46 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.13 1.66 7.60 -52.49 -0.40 1.26 16 30 H 0.13 1.74 7.61 -52.48 -0.40 1.34 16 31 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 285.11 15.07 4.30 4.30 Total: -1.00 -31.43 285.11 -5.97 -37.41 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -2.84 Total: 0.13 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -3.07 Total: -18.86 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.76 Total: -27.60 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.15 Total: -7.97 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.11 Total: -7.30 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.90 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.43 -5.97 -37.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224387621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.270 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds