Wall clock time and date at job start Mon Mar 30 2020 01:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47032 * 125.64719 * 359.69263 * 9 7 2 11 11 C 1.54327 * 107.26586 * 178.85180 * 10 9 7 12 12 C 1.55165 * 103.02096 * 338.13514 * 11 10 9 13 13 H 1.08993 * 111.00445 * 277.23353 * 12 11 10 14 14 O 1.42905 * 111.00385 * 153.38359 * 12 11 10 15 15 C 1.35858 * 116.99901 * 156.35155 * 14 12 11 16 16 N 1.31072 * 125.58955 * 359.69901 * 15 14 12 17 17 N 1.40434 * 106.77156 * 179.85935 * 16 15 14 18 18 H 0.97004 * 126.78167 * 180.15566 * 17 16 15 19 19 C 1.34351 * 106.44667 * 0.39560 * 17 16 15 20 20 C 1.50703 * 125.91296 * 179.79725 * 19 17 16 21 21 Cl 1.80303 * 109.47103 * 269.98118 * 20 19 17 22 22 N 1.30890 * 108.17585 * 359.75724 * 19 17 16 23 23 C 1.47428 * 125.65100 * 179.97438 * 9 7 2 24 24 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.87698 * 298.39404 * 10 9 7 26 26 H 1.08994 * 109.88039 * 59.55472 * 10 9 7 27 27 H 1.09004 * 110.84938 * 219.67305 * 11 10 9 28 28 H 1.08999 * 110.67460 * 96.51874 * 11 10 9 29 29 H 1.09000 * 109.47121 * 29.97957 * 20 19 17 30 30 H 1.08998 * 109.47301 * 149.98344 * 20 19 17 31 31 H 1.08997 * 110.36556 * 322.92731 * 23 9 7 32 32 H 1.08991 * 110.36533 * 85.14032 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4486 -4.0440 -0.0255 12 6 0.8516 -4.6562 -0.6105 13 1 0.8563 -4.5966 -1.6988 14 8 1.0245 -6.0055 -0.1727 15 6 1.7950 -6.8118 -0.9487 16 7 2.3862 -6.4587 -2.0640 17 7 3.0753 -7.5891 -2.5327 18 1 3.6131 -7.6490 -3.3378 19 6 2.8382 -8.5728 -1.6489 20 6 3.3667 -9.9817 -1.7314 21 17 2.2021 -11.0076 -2.6491 22 7 2.0694 -8.0954 -0.7032 23 6 1.9334 -3.7312 0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5506 -2.0863 0.9111 26 1 -0.5613 -2.0502 -0.8743 27 1 -1.2988 -4.2515 -0.6754 28 1 -0.6332 -4.4203 0.9807 29 1 4.3295 -9.9792 -2.2423 30 1 3.4900 -10.3830 -0.7256 31 1 2.8325 -3.7407 -0.6155 32 1 2.1686 -4.0411 1.0187 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227027185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:02 Heat of formation + Delta-G solvation = 80.520196 kcal Electronic energy + Delta-G solvation = -18345.753644 eV Core-core repulsion = 15177.995346 eV Total energy + Delta-G solvation = -3167.758298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.32331 -38.84644 -36.67983 -36.26137 -32.70149 -32.43478 -31.95285 -29.29306 -28.02677 -27.36446 -24.66157 -22.63834 -21.29088 -20.22581 -20.13883 -18.54740 -17.25886 -16.82806 -16.40352 -15.34328 -14.91338 -14.69175 -14.45944 -14.19428 -14.05168 -13.37076 -12.91406 -12.46875 -12.25015 -12.02725 -11.67603 -11.23131 -11.00772 -10.97713 -10.83065 -10.52207 -10.37019 -10.18407 -10.14726 -10.06701 -9.85055 -9.72743 -9.03044 -8.63115 -6.89018 -5.74257 -3.08734 0.90867 1.94932 2.23795 2.70729 2.91717 3.39801 3.44406 3.46583 3.86192 4.14008 4.47713 4.62490 4.81820 5.20885 5.32545 5.37851 5.56761 5.64892 5.72969 5.94863 6.20784 6.37039 6.43269 6.56624 6.67082 6.76120 7.34853 7.50728 7.54509 7.77431 7.98339 8.20773 9.17722 9.77202 10.41778 11.37685 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.048068 B = 0.003447 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.364961 B = 8120.458499 C = 8471.564812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.180 3.820 11 C -0.136 4.136 12 C 0.074 3.926 13 H 0.090 0.910 14 O -0.267 6.267 15 C 0.424 3.576 16 N -0.337 5.337 17 N -0.462 5.462 18 H 0.444 0.556 19 C 0.279 3.721 20 C 0.042 3.958 21 Cl -0.145 7.145 22 N -0.517 5.517 23 C 0.124 3.876 24 H 0.254 0.746 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.045 0.955 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 -20.314 -5.621 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.055 3.945 11 C -0.174 4.174 12 C 0.016 3.984 13 H 0.108 0.892 14 O -0.166 6.166 15 C 0.107 3.893 16 N -0.185 5.185 17 N -0.185 5.185 18 H 0.290 0.710 19 C 0.000 4.000 20 C -0.023 4.023 21 Cl -0.119 7.119 22 N -0.254 5.254 23 C -0.003 4.003 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.141 0.859 30 H 0.154 0.846 31 H 0.063 0.937 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.756 -19.550 -5.324 21.063 hybrid contribution 0.815 0.791 -0.685 1.326 sum 6.571 -18.759 -6.008 20.765 Atomic orbital electron populations 1.69943 1.04900 1.25209 1.56924 1.24821 0.95777 0.97727 1.02033 0.86068 0.78548 0.83223 0.77605 1.21518 1.20662 1.21602 1.19059 0.90505 0.82090 1.44071 0.90303 1.44322 1.01663 0.99531 1.87410 1.21218 0.84471 0.86938 1.01859 1.23099 0.94394 0.98902 1.01024 1.24011 0.98998 0.75575 0.99780 0.89235 1.86250 1.61946 1.23435 1.45004 1.21658 0.91755 0.87978 0.87861 1.78460 1.18651 1.06043 1.15359 1.47515 1.40873 1.07280 1.22851 0.70975 1.23711 0.95722 0.93128 0.87476 1.22575 0.93361 0.83629 1.02752 1.98779 1.65464 1.70295 1.77336 1.69996 1.19636 1.08276 1.27531 1.21849 0.94293 0.86410 0.97778 0.93613 0.93052 0.92892 0.91135 0.90886 0.85874 0.84623 0.93687 0.95330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.31 55.49 0.57 -26.56 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.92 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.88 3.39 -170.08 -0.58 -16.45 16 10 C 0.18 4.44 5.38 -3.06 -0.02 4.42 16 11 C -0.14 -2.69 6.68 -24.89 -0.17 -2.86 16 12 C 0.07 1.47 3.36 -24.59 -0.08 1.38 16 13 H 0.09 1.79 7.45 -51.93 -0.39 1.41 16 14 O -0.27 -5.13 10.02 -19.30 -0.19 -5.32 16 15 C 0.42 7.42 8.90 -91.25 -0.81 6.60 16 16 N -0.34 -5.41 11.77 29.18 0.34 -5.07 16 17 N -0.46 -4.98 7.44 32.62 0.24 -4.73 16 18 H 0.44 2.89 8.96 -182.34 -1.63 1.26 16 19 C 0.28 2.96 7.61 -155.71 -1.18 1.78 16 20 C 0.04 0.24 7.28 36.01 0.26 0.50 16 21 Cl -0.14 -1.12 29.13 -51.86 -1.51 -2.63 16 22 N -0.52 -7.87 11.21 -12.10 -0.14 -8.01 16 23 C 0.12 2.78 6.97 -2.54 -0.02 2.76 16 24 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.05 1.38 7.52 -51.93 -0.39 0.99 16 26 H 0.05 1.41 7.37 -51.93 -0.38 1.03 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 292.36 15.07 4.41 4.41 Total: -1.00 -34.12 292.36 -9.02 -43.14 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.88 Total: -3.59 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -2.27 Total: 7.62 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.45 Total: -60.82 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.19 Total: -5.32 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.51 Total: -2.63 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.12 -9.02 -43.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227027185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.659 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds