Wall clock time and date at job start Mon Mar 30 2020 01:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38693 * 120.00639 * 2 1 4 4 O 1.35899 * 119.99679 * 359.97438 * 3 2 1 5 5 C 1.38659 * 120.00136 * 179.72798 * 3 2 1 6 6 C 1.38695 * 120.00125 * 0.27325 * 5 3 2 7 7 O 1.35888 * 119.99737 * 180.02562 * 6 5 3 8 8 C 1.38653 * 119.99805 * 359.97438 * 6 5 3 9 9 C 1.38662 * 119.99476 * 180.27587 * 2 1 3 10 10 O 1.35893 * 120.00296 * 0.02562 * 9 2 1 11 11 C 1.42900 * 117.00070 * 177.00355 * 10 9 2 12 12 H 1.08998 * 109.46950 * 26.92455 * 11 10 9 13 13 C 1.50695 * 109.47156 * 146.92605 * 11 10 9 14 14 H 1.08003 * 120.00152 * 0.02562 * 13 11 10 15 15 C 1.37879 * 119.99836 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00249 * 0.02562 * 15 13 11 17 17 Si 1.86808 * 119.99769 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47107 * 60.00294 * 17 15 13 19 19 H 1.48497 * 109.46840 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47116 * 299.99943 * 17 15 13 21 21 C 1.52998 * 109.47140 * 266.92635 * 11 10 9 22 22 Cl 1.80301 * 109.47056 * 64.99782 * 21 11 10 23 23 H 1.09004 * 109.47083 * 89.99868 * 1 2 3 24 24 H 1.08998 * 109.47262 * 210.00367 * 1 2 3 25 25 H 1.09001 * 109.46764 * 330.00437 * 1 2 3 26 26 H 0.96701 * 113.99796 * 269.72567 * 4 3 2 27 27 H 1.08004 * 119.99575 * 180.29639 * 5 3 2 28 28 H 0.96704 * 114.00183 * 90.00099 * 7 6 5 29 29 H 1.07998 * 119.99895 * 179.97438 * 8 6 5 30 30 H 0.96999 * 120.00093 * 180.02562 * 16 15 13 31 31 H 1.08998 * 109.47457 * 184.99966 * 21 11 10 32 32 H 1.08995 * 109.47128 * 305.00337 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2006 1.2010 0.0000 4 8 1.5212 2.3780 -0.0005 5 6 3.5872 1.2009 0.0057 6 6 4.2806 -0.0003 0.0057 7 8 5.6395 -0.0003 0.0118 8 6 3.5872 -1.2010 0.0005 9 6 2.2002 -1.2009 -0.0058 10 8 1.5207 -2.3777 -0.0120 11 6 2.2974 -3.5750 -0.0843 12 1 3.2838 -3.3945 0.3431 13 6 1.6074 -4.6689 0.6891 14 1 0.6692 -4.4699 1.1858 15 6 2.1732 -5.9242 0.7617 16 7 3.3153 -6.1667 0.1565 17 14 1.3174 -7.2804 1.7198 18 1 -0.0263 -7.5258 1.1373 19 1 2.1247 -8.5245 1.6448 20 1 1.1740 -6.8689 3.1394 21 6 2.4452 -3.9996 -1.5467 22 17 3.3992 -2.7573 -2.4397 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.3286 2.7205 -0.8841 27 1 4.1272 2.1363 0.0105 28 1 6.0288 -0.0026 0.8970 29 1 4.1271 -2.1363 0.0000 30 1 3.7132 -7.0498 0.2073 31 1 2.9608 -4.9586 -1.5964 32 1 1.4580 -4.0939 -1.9991 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228492868.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:51 Heat of formation + Delta-G solvation = -136.182651 kcal Electronic energy + Delta-G solvation = -19117.618825 eV Core-core repulsion = 15875.878084 eV Total energy + Delta-G solvation = -3241.740741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.065 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47868 -39.56818 -38.78719 -36.77812 -36.10224 -35.15275 -32.80654 -31.26470 -30.22456 -27.30797 -27.02682 -24.51844 -22.71502 -22.23571 -20.10263 -18.98412 -18.09705 -17.91551 -17.41461 -16.76099 -16.33586 -16.21953 -15.71585 -15.41806 -15.05722 -14.63872 -14.15377 -14.03313 -13.86056 -13.62245 -13.07779 -13.01609 -12.89485 -12.67341 -12.46459 -12.10637 -12.00783 -11.75674 -11.63423 -11.44407 -11.18918 -10.91529 -10.59183 -9.37107 -8.92980 -8.38451 -6.54726 0.18753 0.41685 1.40413 1.43358 1.52647 1.59777 2.23174 2.49793 2.63735 2.95758 3.15285 3.59390 4.02423 4.05632 4.16200 4.31437 4.36270 4.47501 4.75862 4.78865 4.86292 4.92192 5.15933 5.25312 5.31024 5.40582 5.49410 5.56398 5.68181 5.82836 6.43963 6.74197 6.81439 6.89114 7.17880 8.68005 Molecular weight = 272.06amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.006372 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.255875 B = 4393.225492 C = 4848.488377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.179 4.179 3 C 0.160 3.840 4 O -0.491 6.491 5 C -0.215 4.215 6 C 0.149 3.851 7 O -0.505 6.505 8 C -0.240 4.240 9 C 0.159 3.841 10 O -0.316 6.316 11 C 0.212 3.788 12 H 0.031 0.969 13 C -0.549 4.549 14 H 0.068 0.932 15 C 0.028 3.972 16 N -0.909 5.909 17 Si 0.977 3.023 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.270 1.270 21 C -0.028 4.028 22 Cl -0.222 7.222 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.412 0.588 27 H 0.152 0.848 28 H 0.410 0.590 29 H 0.122 0.878 30 H 0.276 0.724 31 H 0.117 0.883 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 10.852 -0.837 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.180 4.180 3 C 0.114 3.886 4 O -0.305 6.305 5 C -0.234 4.234 6 C 0.105 3.895 7 O -0.318 6.318 8 C -0.259 4.259 9 C 0.112 3.888 10 O -0.230 6.230 11 C 0.157 3.843 12 H 0.049 0.951 13 C -0.587 4.587 14 H 0.087 0.913 15 C -0.174 4.174 16 N -0.547 5.547 17 Si 0.800 3.200 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.195 1.195 21 C -0.091 4.091 22 Cl -0.196 7.196 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.271 0.729 27 H 0.169 0.831 28 H 0.269 0.731 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.025 10.694 -0.939 10.784 hybrid contribution 0.272 -1.022 0.219 1.080 sum -0.753 9.672 -0.720 9.728 Atomic orbital electron populations 1.20399 0.89104 1.02698 1.02490 1.19720 0.98149 0.89868 1.10250 1.17519 0.88866 0.84435 0.97746 1.84696 1.76053 1.34333 1.35380 1.21505 0.93645 0.98409 1.09862 1.17879 0.83130 0.90927 0.97605 1.84728 1.15370 1.96401 1.35276 1.21640 0.94015 0.99550 1.10674 1.18744 0.90043 0.86717 0.93328 1.86078 1.37282 1.12894 1.86726 1.20291 0.92389 0.80168 0.91471 0.95147 1.21215 1.09204 0.94994 1.33250 0.91346 1.25722 0.95298 1.00399 0.95965 1.69878 1.17967 1.24005 1.42805 0.85302 0.78577 0.77210 0.78871 1.19084 1.20101 1.19536 1.25427 0.96461 0.93651 0.93523 1.98647 1.77853 1.62814 1.80257 0.90937 0.92767 0.89881 0.72854 0.83051 0.73110 0.86026 0.91430 0.86497 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.72 9.56 71.24 0.68 -2.04 16 2 C -0.18 -6.20 5.91 -19.65 -0.12 -6.32 16 3 C 0.16 4.73 6.67 22.48 0.15 4.88 16 4 O -0.49 -11.24 12.54 -92.41 -1.16 -12.40 16 5 C -0.22 -6.35 9.92 22.48 0.22 -6.13 16 6 C 0.15 5.06 6.70 22.48 0.15 5.21 16 7 O -0.50 -14.99 13.50 -92.29 -1.25 -16.24 16 8 C -0.24 -9.61 6.98 22.48 0.16 -9.45 16 9 C 0.16 6.52 5.94 22.48 0.13 6.65 16 10 O -0.32 -14.70 8.77 -92.34 -0.81 -15.51 16 11 C 0.21 10.49 2.19 29.85 0.07 10.55 16 12 H 0.03 1.64 5.39 -2.39 -0.01 1.63 16 13 C -0.55 -28.82 8.89 25.60 0.23 -28.59 16 14 H 0.07 3.60 7.81 -2.91 -0.02 3.58 16 15 C 0.03 1.40 5.29 84.66 0.45 1.84 16 16 N -0.91 -47.47 11.29 21.45 0.24 -47.23 16 17 Si 0.98 40.18 29.54 68.60 2.03 42.21 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 C -0.03 -1.29 6.17 71.98 0.44 -0.84 16 22 Cl -0.22 -9.39 25.60 -2.72 -0.07 -9.46 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.82 7.53 -2.39 -0.02 1.80 16 25 H 0.08 2.13 7.53 -2.39 -0.02 2.11 16 26 H 0.41 5.29 9.06 -74.06 -0.67 4.62 16 27 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.41 7.92 9.06 -74.05 -0.67 7.25 16 29 H 0.12 5.45 5.09 -2.91 -0.01 5.44 16 30 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 31 H 0.12 5.84 5.95 -2.39 -0.01 5.83 16 32 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -60.61 286.86 1.39 -59.22 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.16 Total: 23.65 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 2.56 Total: -24.23 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.24 Total: -47.23 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -3.21 Total: -44.15 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 17 Polarization: -9.39 SS G_CDS: -0.07 Total: -9.46 kcal Total: -60.61 1.39 -59.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228492868.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.967 kcal (2) G-P(sol) polarization free energy of solvation -60.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds