Wall clock time and date at job start Mon Mar 30 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 119.98584 * 2 1 4 4 C 1.50693 * 120.01863 * 0.02562 * 3 2 1 5 5 C 1.38691 * 119.96573 * 179.97438 * 3 2 1 6 6 O 1.35944 * 120.02690 * 179.97438 * 5 3 2 7 7 C 1.42899 * 116.99945 * 185.13334 * 6 5 3 8 8 H 1.09000 * 109.47336 * 21.79302 * 7 6 5 9 9 C 1.50708 * 109.46756 * 141.78903 * 7 6 5 10 10 H 1.07996 * 120.00091 * 95.36045 * 9 7 6 11 11 C 1.37881 * 119.99768 * 275.35413 * 9 7 6 12 12 N 1.31516 * 119.99968 * 355.28008 * 11 9 7 13 13 Si 1.86799 * 119.99698 * 175.27875 * 11 9 7 14 14 H 1.48500 * 109.47158 * 60.00147 * 13 11 9 15 15 H 1.48501 * 109.47130 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46879 * 300.00476 * 13 11 9 17 17 C 1.52998 * 109.47652 * 261.78943 * 7 6 5 18 18 Cl 1.80304 * 109.47052 * 64.65239 * 17 7 6 19 19 C 1.38728 * 119.93995 * 0.27998 * 5 3 2 20 20 C 1.38124 * 119.97137 * 359.46700 * 19 5 3 21 21 C 1.38434 * 119.97989 * 180.02562 * 2 1 3 22 22 F 1.35103 * 119.97509 * 359.97438 * 21 2 1 23 23 H 1.08996 * 109.47144 * 89.99600 * 1 2 3 24 24 H 1.08992 * 109.47160 * 210.00014 * 1 2 3 25 25 H 1.09003 * 109.46772 * 329.99959 * 1 2 3 26 26 H 1.08997 * 109.47141 * 269.98197 * 4 3 2 27 27 H 1.09001 * 109.47051 * 29.97628 * 4 3 2 28 28 H 1.08996 * 109.47504 * 149.97255 * 4 3 2 29 29 H 0.97000 * 120.00248 * 5.25190 * 12 11 9 30 30 H 1.09000 * 109.47039 * 184.65548 * 17 7 6 31 31 H 1.08999 * 109.46768 * 304.65556 * 17 7 6 32 32 H 1.08004 * 120.01067 * 179.70040 * 19 5 3 33 33 H 1.08001 * 119.98653 * 180.22997 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1968 0.0000 4 6 1.4442 2.5019 0.0006 5 6 3.5845 1.1963 0.0005 6 8 4.2652 2.3730 0.0000 7 6 5.6878 2.2995 -0.1133 8 1 5.9679 1.3457 -0.5603 9 6 6.1812 3.4264 -0.9840 10 1 6.5280 4.3447 -0.5336 11 6 6.1899 3.2849 -2.3555 12 7 5.8560 2.1353 -2.9000 13 14 6.6759 4.7261 -3.4400 14 1 8.0626 5.1455 -3.1138 15 1 6.6040 4.3187 -4.8662 16 1 5.7469 5.8599 -3.2020 17 6 6.3169 2.4158 1.2765 18 17 5.8351 0.9940 2.2752 19 6 4.2765 -0.0061 -0.0048 20 6 3.5836 -1.2010 0.0005 21 6 2.1988 -1.1991 -0.0005 22 9 1.5224 -2.3686 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.2625 2.8169 -1.0269 27 1 0.4918 2.3714 0.5144 28 1 2.0333 3.2612 0.5147 29 1 5.5307 1.4109 -2.3429 30 1 7.4026 2.4429 1.1827 31 1 5.9707 3.3311 1.7565 32 1 5.3565 -0.0078 -0.0093 33 1 4.1221 -2.1372 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233868650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:22 Heat of formation + Delta-G solvation = -87.261663 kcal Electronic energy + Delta-G solvation = -19194.890441 eV Core-core repulsion = 15967.643863 eV Total energy + Delta-G solvation = -3227.246578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.36077 -39.60077 -37.09490 -35.25452 -33.42572 -33.02336 -30.77258 -29.47798 -26.89211 -26.04309 -24.86118 -22.45603 -21.18320 -20.16225 -17.58258 -17.18365 -16.40599 -16.18600 -15.31471 -14.63078 -14.22829 -14.09747 -13.93645 -13.59818 -13.24091 -13.10905 -12.71180 -12.67787 -12.46819 -12.14405 -11.79294 -11.65315 -11.44923 -11.30679 -11.02148 -10.68618 -10.62967 -10.28642 -10.25026 -9.83274 -9.41106 -9.10311 -8.68413 -8.24521 -7.18391 -6.80725 -4.65006 1.68082 1.85722 2.86778 3.24249 3.29423 3.46919 4.06494 4.15725 4.31294 4.78015 5.07468 5.16246 5.21117 5.39348 5.55783 5.69769 5.70923 5.72779 5.76855 5.91838 6.00354 6.07029 6.15950 6.24897 6.32456 6.48541 6.63822 6.73210 6.77574 7.00498 7.35844 7.50756 7.96073 8.34964 8.49202 9.14638 10.56275 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.007087 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.351008 B = 3949.868561 C = 4631.875656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.114 4.114 4 C -0.099 4.099 5 C 0.157 3.843 6 O -0.307 6.307 7 C 0.173 3.827 8 H 0.056 0.944 9 C -0.599 4.599 10 H 0.065 0.935 11 C 0.037 3.963 12 N -0.874 5.874 13 Si 1.075 2.925 14 H -0.283 1.283 15 H -0.278 1.278 16 H -0.282 1.282 17 C -0.029 4.029 18 Cl -0.217 7.217 19 C -0.176 4.176 20 C -0.115 4.115 21 C 0.033 3.967 22 F -0.152 7.152 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.275 0.725 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -1.738 5.439 7.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.156 4.156 5 C 0.109 3.891 6 O -0.220 6.220 7 C 0.120 3.880 8 H 0.074 0.926 9 C -0.635 4.635 10 H 0.083 0.917 11 C -0.173 4.173 12 N -0.507 5.507 13 Si 0.901 3.099 14 H -0.209 1.209 15 H -0.203 1.203 16 H -0.208 1.208 17 C -0.092 4.092 18 Cl -0.191 7.191 19 C -0.195 4.195 20 C -0.134 4.134 21 C 0.013 3.987 22 F -0.131 7.131 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.709 -1.248 3.976 6.288 hybrid contribution -0.121 -0.983 1.708 1.974 sum -4.830 -2.231 5.684 7.785 Atomic orbital electron populations 1.20721 0.90774 1.02769 1.02433 1.19383 0.96138 0.90984 1.02481 1.18891 0.90988 0.94916 1.06735 1.20579 0.98784 0.94037 1.02167 1.19044 0.91130 0.86919 0.92047 1.86630 1.24112 1.26349 1.84948 1.20768 0.76276 1.00672 0.90280 0.92618 1.21861 1.46079 1.02561 0.93047 0.91697 1.26166 0.93343 1.01291 0.96512 1.70809 1.36886 1.02784 1.40255 0.83457 0.76588 0.73870 0.76015 1.20866 1.20299 1.20769 1.25250 1.02200 0.88146 0.93593 1.98679 1.93942 1.51023 1.75468 1.21216 1.00984 0.91312 1.05954 1.20761 0.91944 0.98862 1.01848 1.17199 0.89812 0.80560 1.11091 1.91387 1.80449 1.46367 1.94875 0.91111 0.91699 0.90835 0.91532 0.92064 0.90978 0.91363 0.88363 0.89343 0.84434 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.43 36.01 0.34 -1.18 16 2 C -0.09 -1.57 5.88 -104.57 -0.62 -2.18 16 3 C -0.11 -2.19 5.89 -104.48 -0.62 -2.81 16 4 C -0.10 -1.65 9.38 36.00 0.34 -1.31 16 5 C 0.16 3.34 6.16 -39.23 -0.24 3.10 16 6 O -0.31 -7.12 8.73 -19.56 -0.17 -7.29 16 7 C 0.17 3.98 1.87 -27.88 -0.05 3.93 16 8 H 0.06 1.35 3.99 -51.93 -0.21 1.15 16 9 C -0.60 -15.15 8.69 -34.43 -0.30 -15.45 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.04 0.96 5.45 -17.82 -0.10 0.86 16 12 N -0.87 -24.35 13.63 55.43 0.76 -23.60 16 13 Si 1.07 22.88 29.91 -169.99 -5.08 17.80 16 14 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 C -0.03 -0.56 6.32 37.16 0.23 -0.33 16 18 Cl -0.22 -3.97 25.72 -51.86 -1.33 -5.31 16 19 C -0.18 -3.56 7.21 -39.44 -0.28 -3.85 16 20 C -0.12 -2.13 10.02 -39.53 -0.40 -2.53 16 21 C 0.03 0.60 7.24 -39.42 -0.29 0.31 16 22 F -0.15 -2.65 16.47 2.25 0.04 -2.61 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.84 7.63 -51.93 -0.40 0.44 16 25 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.83 5.95 -51.93 -0.31 0.52 16 28 H 0.07 1.26 7.53 -51.93 -0.39 0.87 16 29 H 0.27 7.67 6.66 -40.82 -0.27 7.40 16 30 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.14 2.83 4.88 -52.48 -0.26 2.58 16 33 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -27.42 290.34 -6.86 -34.27 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.46 Total: 3.80 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -1.98 Total: -21.44 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.76 Total: -23.60 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.17 Total: -7.29 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.08 Total: 17.80 kcal Atomic # 17 Polarization: -3.97 SS G_CDS: -1.33 Total: -5.31 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.42 -6.86 -34.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233868650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.990 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds