Wall clock time and date at job start Mon Mar 30 2020 01:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 119.98584 * 2 1 4 4 C 1.50693 * 120.01863 * 0.02562 * 3 2 1 5 5 C 1.38691 * 119.96573 * 179.97438 * 3 2 1 6 6 O 1.35944 * 120.02690 * 179.97438 * 5 3 2 7 7 C 1.42899 * 116.99945 * 185.13334 * 6 5 3 8 8 H 1.09000 * 109.47336 * 21.79302 * 7 6 5 9 9 C 1.50708 * 109.46756 * 141.78903 * 7 6 5 10 10 H 1.07996 * 120.00091 * 95.36045 * 9 7 6 11 11 C 1.37881 * 119.99768 * 275.35413 * 9 7 6 12 12 N 1.31516 * 119.99968 * 355.28008 * 11 9 7 13 13 Si 1.86799 * 119.99698 * 175.27875 * 11 9 7 14 14 H 1.48500 * 109.47158 * 60.00147 * 13 11 9 15 15 H 1.48501 * 109.47130 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46879 * 300.00476 * 13 11 9 17 17 C 1.52998 * 109.47652 * 261.78943 * 7 6 5 18 18 Cl 1.80304 * 109.47052 * 64.65239 * 17 7 6 19 19 C 1.38728 * 119.93995 * 0.27998 * 5 3 2 20 20 C 1.38124 * 119.97137 * 359.46700 * 19 5 3 21 21 C 1.38434 * 119.97989 * 180.02562 * 2 1 3 22 22 F 1.35103 * 119.97509 * 359.97438 * 21 2 1 23 23 H 1.08996 * 109.47144 * 89.99600 * 1 2 3 24 24 H 1.08992 * 109.47160 * 210.00014 * 1 2 3 25 25 H 1.09003 * 109.46772 * 329.99959 * 1 2 3 26 26 H 1.08997 * 109.47141 * 269.98197 * 4 3 2 27 27 H 1.09001 * 109.47051 * 29.97628 * 4 3 2 28 28 H 1.08996 * 109.47504 * 149.97255 * 4 3 2 29 29 H 0.97000 * 120.00248 * 5.25190 * 12 11 9 30 30 H 1.09000 * 109.47039 * 184.65548 * 17 7 6 31 31 H 1.08999 * 109.46768 * 304.65556 * 17 7 6 32 32 H 1.08004 * 120.01067 * 179.70040 * 19 5 3 33 33 H 1.08001 * 119.98653 * 180.22997 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1968 0.0000 4 6 1.4442 2.5019 0.0006 5 6 3.5845 1.1963 0.0005 6 8 4.2652 2.3730 0.0000 7 6 5.6878 2.2995 -0.1133 8 1 5.9679 1.3457 -0.5603 9 6 6.1812 3.4264 -0.9840 10 1 6.5280 4.3447 -0.5336 11 6 6.1899 3.2849 -2.3555 12 7 5.8560 2.1353 -2.9000 13 14 6.6759 4.7261 -3.4400 14 1 8.0626 5.1455 -3.1138 15 1 6.6040 4.3187 -4.8662 16 1 5.7469 5.8599 -3.2020 17 6 6.3169 2.4158 1.2765 18 17 5.8351 0.9940 2.2752 19 6 4.2765 -0.0061 -0.0048 20 6 3.5836 -1.2010 0.0005 21 6 2.1988 -1.1991 -0.0005 22 9 1.5224 -2.3686 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.2625 2.8169 -1.0269 27 1 0.4918 2.3714 0.5144 28 1 2.0333 3.2612 0.5147 29 1 5.5307 1.4109 -2.3429 30 1 7.4026 2.4429 1.1827 31 1 5.9707 3.3311 1.7565 32 1 5.3565 -0.0078 -0.0093 33 1 4.1221 -2.1372 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233868650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:21 Heat of formation + Delta-G solvation = -100.474110 kcal Electronic energy + Delta-G solvation = -19195.463376 eV Core-core repulsion = 15967.643863 eV Total energy + Delta-G solvation = -3227.819513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.78877 -41.17025 -38.68358 -36.78809 -35.29780 -34.43118 -32.35391 -31.02847 -28.29726 -27.39990 -26.73781 -24.10521 -22.66759 -21.73619 -19.37749 -18.78302 -17.89835 -17.72441 -16.77281 -16.27092 -15.91072 -15.66425 -15.59215 -14.92256 -14.65758 -14.56559 -14.21300 -14.07631 -13.93112 -13.61180 -13.41688 -13.08879 -12.87260 -12.67524 -12.60356 -12.27817 -12.17316 -11.94835 -11.73143 -11.38590 -11.09356 -10.84251 -10.57939 -9.67226 -8.83237 -8.75767 -6.67482 0.21504 0.33833 1.31553 1.54643 1.60824 1.80800 2.39202 2.57301 2.64314 3.26113 3.33312 3.76337 3.77508 4.00437 4.01892 4.10355 4.24305 4.33694 4.52381 4.59536 4.70239 4.73570 4.79093 4.84479 4.89270 5.09540 5.19952 5.29573 5.34763 5.50956 5.65488 5.90943 5.96415 6.32489 6.79833 7.20355 8.54107 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.007087 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.351008 B = 3949.868561 C = 4631.875656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.096 4.096 5 C 0.128 3.872 6 O -0.323 6.323 7 C 0.173 3.827 8 H 0.038 0.962 9 C -0.612 4.612 10 H 0.069 0.931 11 C -0.009 4.009 12 N -0.908 5.908 13 Si 1.117 2.883 14 H -0.261 1.261 15 H -0.285 1.285 16 H -0.270 1.270 17 C -0.023 4.023 18 Cl -0.206 7.206 19 C -0.186 4.186 20 C -0.120 4.120 21 C 0.029 3.971 22 F -0.145 7.145 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.262 0.738 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -1.439 5.997 8.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.127 4.127 4 C -0.152 4.152 5 C 0.081 3.919 6 O -0.237 6.237 7 C 0.119 3.881 8 H 0.056 0.944 9 C -0.649 4.649 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.543 5.543 13 Si 0.937 3.063 14 H -0.185 1.185 15 H -0.211 1.211 16 H -0.195 1.195 17 C -0.085 4.085 18 Cl -0.179 7.179 19 C -0.205 4.205 20 C -0.139 4.139 21 C 0.010 3.990 22 F -0.124 7.124 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.865 -0.957 4.564 7.493 hybrid contribution 0.154 -1.186 1.615 2.010 sum -5.711 -2.143 6.179 8.683 Atomic orbital electron populations 1.20837 0.87675 1.04343 1.03701 1.19800 0.98343 0.89988 1.00614 1.19266 0.90399 0.96667 1.06341 1.20606 0.99843 0.92328 1.02399 1.19349 0.92177 0.86453 0.93915 1.86487 1.23807 1.27525 1.85890 1.20643 0.76480 0.99051 0.91898 0.94444 1.22214 1.45872 1.03185 0.93611 0.91316 1.27486 0.92799 1.02500 0.98405 1.70919 1.39575 1.03551 1.40211 0.82939 0.77743 0.71552 0.74030 1.18515 1.21070 1.19507 1.25048 1.02578 0.88829 0.92091 1.98676 1.93953 1.50470 1.74832 1.21169 1.00589 0.91822 1.06927 1.20975 0.92512 0.99064 1.01349 1.17344 0.89837 0.81166 1.10650 1.91405 1.80212 1.45992 1.94778 0.89810 0.90610 0.88821 0.91604 0.88584 0.92393 0.92738 0.87126 0.88556 0.85497 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.64 9.43 71.24 0.67 -1.97 16 2 C -0.09 -2.88 5.88 -19.83 -0.12 -3.00 16 3 C -0.13 -4.70 5.89 -19.77 -0.12 -4.82 16 4 C -0.10 -3.02 9.38 71.23 0.67 -2.35 16 5 C 0.13 5.50 6.16 22.50 0.14 5.64 16 6 O -0.32 -15.23 8.73 -92.92 -0.81 -16.04 16 7 C 0.17 8.09 1.87 29.85 0.06 8.15 16 8 H 0.04 1.90 3.99 -2.39 -0.01 1.89 16 9 C -0.61 -31.24 8.69 25.60 0.22 -31.02 16 10 H 0.07 3.36 7.81 -2.91 -0.02 3.33 16 11 C -0.01 -0.46 5.45 84.66 0.46 0.00 16 12 N -0.91 -51.89 13.63 21.45 0.29 -51.59 16 13 Si 1.12 45.89 29.91 68.60 2.05 47.94 16 14 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 15 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 17 C -0.02 -0.88 6.32 71.98 0.45 -0.42 16 18 Cl -0.21 -7.43 25.72 -2.72 -0.07 -7.50 16 19 C -0.19 -7.65 7.21 22.36 0.16 -7.49 16 20 C -0.12 -4.39 10.02 22.30 0.22 -4.16 16 21 C 0.03 1.03 7.24 22.38 0.16 1.19 16 22 F -0.14 -4.74 16.47 44.97 0.74 -4.00 16 23 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.08 1.68 7.63 -2.39 -0.02 1.67 16 25 H 0.09 1.88 5.95 -2.39 -0.01 1.87 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.10 2.30 5.95 -2.39 -0.01 2.28 16 28 H 0.06 1.98 7.53 -2.39 -0.02 1.96 16 29 H 0.26 15.23 6.66 -92.71 -0.62 14.61 16 30 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 31 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.13 5.41 4.88 -2.91 -0.01 5.40 16 33 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -59.05 290.34 6.48 -52.57 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 1.29 Total: 18.88 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 2.99 Total: -40.25 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.29 Total: -51.59 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.81 Total: -16.04 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.74 Total: -4.00 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.05 Total: 47.94 kcal Atomic # 17 Polarization: -7.43 SS G_CDS: -0.07 Total: -7.50 kcal Total: -59.05 6.48 -52.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233868650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.903 kcal (2) G-P(sol) polarization free energy of solvation -59.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds