Wall clock time and date at job start Mon Mar 30 2020 01:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48496 * 109.47496 * 270.00107 * 3 2 1 5 5 H 1.48501 * 109.47138 * 29.99722 * 3 2 1 6 6 H 1.48508 * 109.47363 * 149.99770 * 3 2 1 7 7 C 1.38631 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00479 * 359.97438 * 7 2 1 10 10 C 1.35704 * 117.00322 * 185.05890 * 9 7 2 11 11 C 1.39006 * 119.94064 * 354.45152 * 10 9 7 12 12 C 1.37823 * 120.05456 * 180.02562 * 11 10 9 13 13 C 1.39486 * 119.94395 * 359.97438 * 12 11 10 14 14 C 1.48224 * 120.05835 * 179.97438 * 13 12 11 15 15 C 1.39307 * 120.16980 * 310.00433 * 14 13 12 16 16 C 1.38010 * 119.95270 * 179.97438 * 15 14 13 17 17 C 1.38444 * 120.29703 * 359.97438 * 16 15 14 18 18 C 1.38107 * 120.33891 * 0.02562 * 17 16 15 19 19 C 1.38843 * 120.04513 * 0.02562 * 18 17 16 20 20 S 1.76195 * 120.15100 * 179.97438 * 19 18 17 21 21 C 1.39485 * 119.88638 * 0.25297 * 13 12 11 22 22 C 1.37827 * 119.93870 * 359.49597 * 21 13 12 23 23 H 0.96991 * 119.99996 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.97356 * 0.02562 * 11 10 9 25 25 H 1.08000 * 120.02871 * 180.02562 * 12 11 10 26 26 H 1.08003 * 120.02145 * 359.97438 * 15 14 13 27 27 H 1.07995 * 119.85153 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.83264 * 179.74623 * 17 16 15 29 29 H 1.08000 * 119.98379 * 180.02562 * 18 17 16 30 30 H 1.34498 * 103.00017 * 269.99762 * 20 19 18 31 31 H 1.07997 * 120.02995 * 179.71901 * 21 13 12 32 32 H 1.08005 * 119.96877 * 180.25186 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5474 1.4401 0.7001 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0698 -3.5039 0.1055 11 6 3.4582 -3.4357 0.0915 12 6 4.2070 -4.5878 0.1986 13 6 3.5706 -5.8229 0.3216 14 6 4.3734 -7.0636 0.4363 15 6 5.3978 -7.3212 -0.4720 16 6 6.1428 -8.4775 -0.3607 17 6 5.8776 -9.3846 0.6511 18 6 4.8650 -9.1415 1.5582 19 6 4.1059 -7.9832 1.4587 20 16 2.8128 -7.6705 2.6140 21 6 2.1773 -5.8891 0.3306 22 6 1.4332 -4.7335 0.2285 23 1 -0.4850 0.8400 -0.0004 24 1 3.9504 -2.4791 -0.0033 25 1 5.2856 -4.5343 0.1880 26 1 5.6087 -6.6164 -1.2627 27 1 6.9363 -8.6757 -1.0659 28 1 6.4627 -10.2891 0.7287 29 1 4.6633 -9.8528 2.3454 30 1 1.7425 -8.2397 2.0315 31 1 1.6822 -6.8446 0.4212 32 1 0.3543 -4.7837 0.2395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:59 Heat of formation + Delta-G solvation = 27.165140 kcal Electronic energy + Delta-G solvation = -17218.940467 eV Core-core repulsion = 14429.468739 eV Total energy + Delta-G solvation = -2789.471728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.061 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50793 -38.58046 -36.38596 -32.52487 -31.61034 -31.10331 -30.19003 -27.79331 -25.41741 -23.02372 -22.87812 -21.61668 -20.51546 -18.21501 -17.97609 -17.04147 -16.39878 -15.45256 -15.16378 -14.58917 -14.41978 -14.22447 -13.74580 -13.62394 -13.47718 -12.99988 -12.77350 -12.46070 -12.01556 -11.72677 -11.58741 -11.27672 -10.91310 -10.81016 -10.74841 -10.50602 -10.42264 -9.42129 -9.03396 -8.90466 -8.66556 -8.37149 -7.72167 -7.06666 -6.50310 -4.07857 0.91720 1.25830 1.82596 2.22859 2.34817 2.91980 3.10675 3.12085 3.16876 3.74873 3.93109 4.52729 4.84784 4.91209 4.98124 5.05744 5.22050 5.32617 5.44486 5.60073 5.65029 5.77474 5.96616 6.15230 6.23179 6.25577 6.38699 6.50591 6.62480 6.80936 6.87415 7.03602 7.20802 7.31227 7.38973 7.75202 7.94881 8.95096 9.64010 10.67251 Molecular weight = 272.06amu Principal moments of inertia in cm(-1) A = 0.033266 B = 0.004142 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.487676 B = 6757.627905 C = 7250.279265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.164 3.836 11 C -0.237 4.237 12 C -0.044 4.044 13 C -0.165 4.165 14 C 0.041 3.959 15 C -0.128 4.128 16 C -0.091 4.091 17 C -0.146 4.146 18 C -0.070 4.070 19 C -0.114 4.114 20 S -0.119 6.119 21 C -0.034 4.034 22 C -0.194 4.194 23 H 0.271 0.729 24 H 0.130 0.870 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -14.509 0.762 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.074 6.074 10 C 0.109 3.891 11 C -0.256 4.256 12 C -0.063 4.063 13 C -0.166 4.166 14 C 0.039 3.961 15 C -0.147 4.147 16 C -0.110 4.110 17 C -0.166 4.166 18 C -0.091 4.091 19 C -0.226 4.226 20 S 0.040 5.960 21 C -0.053 4.053 22 C -0.213 4.213 23 H 0.081 0.919 24 H 0.147 0.853 25 H 0.127 0.873 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.033 0.967 31 H 0.117 0.883 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.925 -14.004 1.507 16.675 hybrid contribution 0.457 0.128 -1.175 1.267 sum 9.382 -13.876 0.333 16.753 Atomic orbital electron populations 1.70043 1.06013 1.27846 1.45465 1.25318 0.95858 0.98935 0.96371 0.85694 0.78991 0.79919 0.78755 1.19833 1.20188 1.19066 1.21376 0.91929 0.80734 1.52747 0.88840 1.83957 1.34585 1.11577 1.77322 1.19443 0.90263 0.87890 0.91464 1.21052 0.93677 0.98821 1.12072 1.20686 0.98228 0.91112 0.96240 1.18039 0.92534 0.91145 1.14931 1.19213 0.93094 0.92483 0.91350 1.21337 0.96100 0.97847 0.99462 1.21240 0.98411 0.93851 0.97462 1.21096 0.99020 1.00201 0.96315 1.21472 0.94422 0.95296 0.97885 1.21420 1.02023 0.98856 1.00326 1.86044 1.04811 1.77473 1.27701 1.20480 0.92271 0.96381 0.96200 1.20045 0.99480 0.90076 1.11728 0.91900 0.85272 0.87293 0.85328 0.85833 0.85862 0.85289 0.96723 0.88253 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.78 9.48 30.88 0.29 -10.49 16 8 H 0.09 2.37 5.19 -52.49 -0.27 2.09 16 9 O -0.17 -4.85 9.75 0.24 0.00 -4.84 16 10 C 0.16 3.93 6.65 -39.01 -0.26 3.67 16 11 C -0.24 -5.07 9.15 -39.45 -0.36 -5.44 16 12 C -0.04 -0.82 9.50 -39.27 -0.37 -1.19 16 13 C -0.17 -2.94 5.07 -104.86 -0.53 -3.47 16 14 C 0.04 0.63 5.49 -104.70 -0.57 0.06 16 15 C -0.13 -1.65 9.50 -39.27 -0.37 -2.03 16 16 C -0.09 -0.97 10.03 -39.59 -0.40 -1.37 16 17 C -0.15 -1.50 10.03 -39.55 -0.40 -1.90 16 18 C -0.07 -0.82 9.78 -39.41 -0.39 -1.21 16 19 C -0.11 -1.64 6.10 -38.66 -0.24 -1.87 16 20 S -0.12 -1.74 22.84 -107.50 -2.45 -4.19 16 21 C -0.03 -0.63 8.08 -39.27 -0.32 -0.95 16 22 C -0.19 -4.11 9.98 -39.45 -0.39 -4.50 16 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.13 2.74 5.62 -52.49 -0.30 2.45 16 25 H 0.11 1.72 8.04 -52.49 -0.42 1.30 16 26 H 0.13 1.54 8.04 -52.48 -0.42 1.12 16 27 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.07 0.93 8.47 97.61 0.83 1.75 16 31 H 0.10 1.65 6.63 -52.49 -0.35 1.30 16 32 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 294.00 15.07 4.43 4.43 Total: -1.00 -29.89 294.00 -8.45 -38.34 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -1.76 Total: 4.92 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -4.40 Total: -29.70 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.76 Total: -24.14 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.00 Total: -4.84 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.45 Total: -4.19 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.89 -8.45 -38.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.506 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds