Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48496 * 109.47496 * 270.00107 * 3 2 1 5 5 H 1.48501 * 109.47138 * 29.99722 * 3 2 1 6 6 H 1.48508 * 109.47363 * 149.99770 * 3 2 1 7 7 C 1.38631 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00479 * 359.97438 * 7 2 1 10 10 C 1.35704 * 117.00322 * 185.05890 * 9 7 2 11 11 C 1.39006 * 119.94064 * 354.45152 * 10 9 7 12 12 C 1.37823 * 120.05456 * 180.02562 * 11 10 9 13 13 C 1.39486 * 119.94395 * 359.97438 * 12 11 10 14 14 C 1.48224 * 120.05835 * 179.97438 * 13 12 11 15 15 C 1.39307 * 120.16980 * 310.00433 * 14 13 12 16 16 C 1.38010 * 119.95270 * 179.97438 * 15 14 13 17 17 C 1.38444 * 120.29703 * 359.97438 * 16 15 14 18 18 C 1.38107 * 120.33891 * 0.02562 * 17 16 15 19 19 C 1.38843 * 120.04513 * 0.02562 * 18 17 16 20 20 S 1.76195 * 120.15100 * 179.97438 * 19 18 17 21 21 C 1.39485 * 119.88638 * 0.25297 * 13 12 11 22 22 C 1.37827 * 119.93870 * 359.49597 * 21 13 12 23 23 H 0.96991 * 119.99996 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.97356 * 0.02562 * 11 10 9 25 25 H 1.08000 * 120.02871 * 180.02562 * 12 11 10 26 26 H 1.08003 * 120.02145 * 359.97438 * 15 14 13 27 27 H 1.07995 * 119.85153 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.83264 * 179.74623 * 17 16 15 29 29 H 1.08000 * 119.98379 * 180.02562 * 18 17 16 30 30 H 1.34498 * 103.00017 * 269.99762 * 20 19 18 31 31 H 1.07997 * 120.02995 * 179.71901 * 21 13 12 32 32 H 1.08005 * 119.96877 * 180.25186 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5474 1.4401 0.7001 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0698 -3.5039 0.1055 11 6 3.4582 -3.4357 0.0915 12 6 4.2070 -4.5878 0.1986 13 6 3.5706 -5.8229 0.3216 14 6 4.3734 -7.0636 0.4363 15 6 5.3978 -7.3212 -0.4720 16 6 6.1428 -8.4775 -0.3607 17 6 5.8776 -9.3846 0.6511 18 6 4.8650 -9.1415 1.5582 19 6 4.1059 -7.9832 1.4587 20 16 2.8128 -7.6705 2.6140 21 6 2.1773 -5.8891 0.3306 22 6 1.4332 -4.7335 0.2285 23 1 -0.4850 0.8400 -0.0004 24 1 3.9504 -2.4791 -0.0033 25 1 5.2856 -4.5343 0.1880 26 1 5.6087 -6.6164 -1.2627 27 1 6.9363 -8.6757 -1.0659 28 1 6.4627 -10.2891 0.7287 29 1 4.6633 -9.8528 2.3454 30 1 1.7425 -8.2397 2.0315 31 1 1.6822 -6.8446 0.4212 32 1 0.3543 -4.7837 0.2395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = 10.939786 kcal Electronic energy + Delta-G solvation = -17219.644052 eV Core-core repulsion = 14429.468739 eV Total energy + Delta-G solvation = -2790.175312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.061 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96148 -39.93698 -37.99927 -34.38324 -32.95886 -32.19417 -31.66332 -29.23501 -27.33121 -24.21925 -24.15462 -23.04382 -21.91324 -19.91510 -19.30836 -18.68838 -17.60589 -16.60038 -16.46903 -16.24394 -15.92354 -15.53195 -15.48608 -14.98572 -14.67801 -14.48028 -14.26129 -13.76267 -13.50232 -13.22962 -13.01126 -12.65502 -12.44620 -12.34831 -12.12419 -11.99649 -11.57909 -11.22414 -10.82903 -9.94536 -9.92558 -9.83741 -9.03083 -8.64128 -8.47462 -6.15309 -0.13198 0.23924 0.58491 0.73937 0.87302 1.36523 1.45903 1.54260 1.84353 2.18118 2.70330 2.88269 3.15562 3.46456 3.72504 3.98223 4.07692 4.10609 4.21162 4.45129 4.47332 4.52885 4.70118 4.74491 4.92977 5.04111 5.10956 5.22056 5.35862 5.41873 5.50473 5.56246 5.66936 5.74346 5.97042 6.01573 6.12815 6.96908 7.75998 8.75383 Molecular weight = 272.06amu Principal moments of inertia in cm(-1) A = 0.033266 B = 0.004142 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.487676 B = 6757.627905 C = 7250.279265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.227 6.227 10 C 0.125 3.875 11 C -0.240 4.240 12 C -0.045 4.045 13 C -0.135 4.135 14 C 0.004 3.996 15 C -0.130 4.130 16 C -0.085 4.085 17 C -0.129 4.129 18 C -0.073 4.073 19 C -0.123 4.123 20 S -0.148 6.148 21 C -0.033 4.033 22 C -0.203 4.203 23 H 0.273 0.727 24 H 0.126 0.874 25 H 0.142 0.858 26 H 0.136 0.864 27 H 0.159 0.841 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.603 -17.256 0.590 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.490 4.490 8 H 0.122 0.878 9 O -0.133 6.133 10 C 0.074 3.926 11 C -0.259 4.259 12 C -0.063 4.063 13 C -0.136 4.136 14 C 0.002 3.998 15 C -0.149 4.149 16 C -0.102 4.102 17 C -0.149 4.149 18 C -0.094 4.094 19 C -0.235 4.235 20 S 0.011 5.989 21 C -0.052 4.052 22 C -0.222 4.222 23 H 0.082 0.918 24 H 0.144 0.856 25 H 0.160 0.840 26 H 0.154 0.846 27 H 0.177 0.823 28 H 0.179 0.821 29 H 0.167 0.833 30 H 0.042 0.958 31 H 0.138 0.862 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.644 -16.817 1.339 21.083 hybrid contribution -0.469 0.440 -1.095 1.269 sum 12.175 -16.377 0.245 20.408 Atomic orbital electron populations 1.70191 1.08086 1.28879 1.48613 1.26608 0.96834 1.02782 0.95709 0.84581 0.77861 0.74447 0.79304 1.18696 1.19684 1.17519 1.21875 0.92687 0.81305 1.53183 0.87770 1.83930 1.36065 1.12630 1.80719 1.19923 0.91577 0.87722 0.93331 1.21162 0.92870 0.99956 1.11924 1.21008 0.99730 0.90218 0.95365 1.18438 0.92469 0.92472 1.10241 1.19111 0.94901 0.92075 0.93746 1.21504 0.95387 0.99087 0.98962 1.21651 0.98298 0.92469 0.97830 1.21593 0.97713 1.00946 0.94613 1.21772 0.94251 0.94571 0.98798 1.21499 1.02161 0.99757 1.00037 1.86175 1.06077 1.77899 1.28756 1.20712 0.92926 0.96141 0.95406 1.20232 0.99745 0.90350 1.11904 0.91793 0.85630 0.84015 0.84611 0.82336 0.82124 0.83307 0.95759 0.86158 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.55 13.67 21.61 0.30 -56.26 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 3 Si 1.02 42.65 29.55 68.60 2.03 44.68 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.41 -24.11 9.48 67.91 0.64 -23.46 16 8 H 0.11 5.52 5.19 -2.91 -0.02 5.50 16 9 O -0.23 -13.75 9.75 -22.05 -0.22 -13.97 16 10 C 0.13 6.33 6.65 22.64 0.15 6.48 16 11 C -0.24 -10.50 9.15 22.36 0.20 -10.30 16 12 C -0.05 -1.61 9.50 22.47 0.21 -1.40 16 13 C -0.14 -4.61 5.07 -20.02 -0.10 -4.71 16 14 C 0.00 0.12 5.49 -19.92 -0.11 0.01 16 15 C -0.13 -2.82 9.50 22.47 0.21 -2.61 16 16 C -0.08 -1.32 10.03 22.26 0.22 -1.09 16 17 C -0.13 -1.88 10.03 22.29 0.22 -1.65 16 18 C -0.07 -1.39 9.78 22.38 0.22 -1.18 16 19 C -0.12 -3.15 6.10 22.86 0.14 -3.01 16 20 S -0.15 -4.11 22.84 -56.49 -1.29 -5.40 16 21 C -0.03 -1.21 8.08 22.47 0.18 -1.03 16 22 C -0.20 -8.98 9.98 22.36 0.22 -8.76 16 23 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.13 5.49 5.62 -2.91 -0.02 5.48 16 25 H 0.14 4.09 8.04 -2.91 -0.02 4.07 16 26 H 0.14 2.71 8.04 -2.91 -0.02 2.69 16 27 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 28 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.08 2.01 8.47 73.35 0.62 2.63 16 31 H 0.12 3.88 6.63 -2.91 -0.02 3.86 16 32 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -70.38 294.00 5.49 -64.89 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.78 Total: 19.53 kcal Atomic # 6 Polarization: -56.37 SS G_CDS: 2.89 Total: -53.48 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.30 Total: -56.26 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.22 Total: -13.97 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -1.29 Total: -5.40 kcal Total: -70.38 5.49 -64.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.828 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds