Wall clock time and date at job start Mon Mar 30 2020 01:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86794 * 119.99789 * 2 1 4 4 H 1.48508 * 109.47006 * 269.99692 * 3 2 1 5 5 H 1.48494 * 109.47464 * 29.99561 * 3 2 1 6 6 H 1.48498 * 109.47380 * 149.99916 * 3 2 1 7 7 C 1.38651 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00028 * 179.97438 * 7 2 1 9 9 O 1.34819 * 119.99748 * 0.02562 * 7 2 1 10 10 C 1.35696 * 116.99692 * 185.05600 * 9 7 2 11 11 C 1.39004 * 119.94967 * 354.45100 * 10 9 7 12 12 C 1.37840 * 120.05345 * 180.02562 * 11 10 9 13 13 C 1.39430 * 119.94611 * 359.97349 * 12 11 10 14 14 C 1.48327 * 120.04914 * 179.97438 * 13 12 11 15 15 C 1.39459 * 120.08808 * 359.97438 * 14 13 12 16 16 C 1.38048 * 120.03821 * 179.72100 * 15 14 13 17 17 C 1.38197 * 120.20867 * 0.26022 * 16 15 14 18 18 C 1.39044 * 120.16911 * 359.97438 * 17 16 15 19 19 S 1.76205 * 120.01663 * 180.02562 * 18 17 16 20 20 C 1.38770 * 119.96248 * 359.97438 * 18 17 16 21 21 C 1.39428 * 119.89734 * 0.25837 * 13 12 11 22 22 C 1.37844 * 119.94857 * 359.50665 * 21 13 12 23 23 H 0.97000 * 120.00314 * 0.02562 * 1 2 3 24 24 H 1.08007 * 119.97131 * 359.97438 * 11 10 9 25 25 H 1.07997 * 120.02246 * 180.02562 * 12 11 10 26 26 H 1.08000 * 119.97694 * 0.02562 * 15 14 13 27 27 H 1.07990 * 119.89932 * 180.27509 * 16 15 14 28 28 H 1.08000 * 119.91828 * 179.97438 * 17 16 15 29 29 H 1.34502 * 102.99931 * 89.99595 * 19 18 17 30 30 H 1.08007 * 120.10452 * 180.02562 * 20 18 17 31 31 H 1.08001 * 120.02843 * 179.74360 * 21 13 12 32 32 H 1.08005 * 119.97040 * 180.23236 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3683 0.0005 10 6 2.0697 -3.5040 0.1076 11 6 3.4580 -3.4359 0.0946 12 6 4.2067 -4.5882 0.2027 13 6 3.5703 -5.8227 0.3258 14 6 4.3737 -7.0642 0.4417 15 6 5.7667 -6.9994 0.4273 16 6 6.5134 -8.1549 0.5411 17 6 5.8851 -9.3796 0.6641 18 6 4.4967 -9.4547 0.6745 19 16 3.6997 -11.0183 0.8323 20 6 3.7391 -8.2975 0.5617 21 6 2.1776 -5.8889 0.3337 22 6 1.4332 -4.7335 0.2302 23 1 -0.4850 0.8400 -0.0004 24 1 3.9505 -2.4794 -0.0012 25 1 5.2853 -4.5347 0.1929 26 1 6.2615 -6.0442 0.3321 27 1 7.5920 -8.1017 0.5341 28 1 6.4739 -10.2807 0.7524 29 1 3.5657 -11.1566 2.1634 30 1 2.6605 -8.3531 0.5700 31 1 1.6825 -6.8444 0.4248 32 1 0.3543 -4.7840 0.2401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:07 Heat of formation + Delta-G solvation = 8.191317 kcal Electronic energy + Delta-G solvation = -16939.686856 eV Core-core repulsion = 14149.392361 eV Total energy + Delta-G solvation = -2790.294495 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.061 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02580 -39.98223 -37.99293 -34.41017 -32.99395 -32.47868 -31.49638 -29.20996 -27.35915 -24.58870 -24.21539 -22.67164 -21.98191 -19.87259 -19.27446 -18.70931 -17.60738 -16.78425 -16.51842 -16.29528 -15.66651 -15.57946 -15.38688 -15.05369 -14.80495 -14.50662 -14.14124 -13.94002 -13.56591 -13.14149 -12.90090 -12.80675 -12.60772 -12.31739 -12.12693 -11.97742 -11.63500 -11.14332 -10.90107 -10.16502 -9.89786 -9.86600 -9.18472 -8.59737 -8.49689 -6.17056 -0.20393 0.10063 0.55162 0.70374 1.01501 1.35710 1.45306 1.53267 1.84255 2.16440 2.63510 2.95053 3.23203 3.43884 3.71300 3.85657 3.99418 4.15985 4.25429 4.33115 4.41907 4.48805 4.67665 4.76295 4.87966 5.05236 5.09213 5.20042 5.30106 5.38023 5.41957 5.54675 5.64696 5.82280 5.92400 5.99147 6.12052 6.94423 7.72928 8.72810 Molecular weight = 272.06amu Principal moments of inertia in cm(-1) A = 0.042200 B = 0.003421 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.348652 B = 8183.623112 C = 8824.283085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.416 4.416 8 H 0.106 0.894 9 O -0.226 6.226 10 C 0.120 3.880 11 C -0.240 4.240 12 C -0.053 4.053 13 C -0.138 4.138 14 C -0.034 4.034 15 C -0.103 4.103 16 C -0.114 4.114 17 C -0.086 4.086 18 C -0.114 4.114 19 S -0.137 6.137 20 C -0.089 4.089 21 C -0.057 4.057 22 C -0.202 4.202 23 H 0.274 0.726 24 H 0.126 0.874 25 H 0.150 0.850 26 H 0.143 0.857 27 H 0.161 0.839 28 H 0.153 0.847 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.637 -16.129 1.895 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.492 4.492 8 H 0.123 0.877 9 O -0.132 6.132 10 C 0.069 3.931 11 C -0.259 4.259 12 C -0.070 4.070 13 C -0.139 4.139 14 C -0.036 4.036 15 C -0.121 4.121 16 C -0.134 4.134 17 C -0.106 4.106 18 C -0.226 4.226 19 S 0.020 5.980 20 C -0.109 4.109 21 C -0.074 4.074 22 C -0.221 4.221 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.167 0.833 26 H 0.161 0.839 27 H 0.178 0.822 28 H 0.170 0.830 29 H 0.047 0.953 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.790 -16.804 1.738 21.189 hybrid contribution -0.001 1.874 0.901 2.079 sum 12.789 -14.930 2.638 19.835 Atomic orbital electron populations 1.70184 1.08101 1.28968 1.48336 1.26625 0.96840 1.02831 0.95651 0.84573 0.77871 0.74396 0.79312 1.18744 1.19698 1.17438 1.21887 0.92707 0.81279 1.53278 0.87693 1.83932 1.36119 1.12680 1.80470 1.20034 0.91693 0.87892 0.93481 1.21229 0.92927 1.00142 1.11627 1.21159 1.00215 0.90356 0.95316 1.18573 0.92762 0.92473 1.10066 1.18787 0.93651 0.91375 0.99761 1.21697 0.92505 1.00297 0.97563 1.21441 1.01552 0.91114 0.99273 1.21868 0.92580 0.99376 0.96787 1.21226 0.96426 0.94901 1.10053 1.85967 1.79253 1.21200 1.11585 1.21728 1.00511 0.90846 0.97832 1.21064 0.93090 0.97142 0.96143 1.20386 1.00135 0.90353 1.11263 0.91724 0.85592 0.83294 0.83936 0.82171 0.82962 0.95346 0.84739 0.83525 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.67 13.67 21.61 0.30 -55.37 16 2 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 3 Si 1.02 41.85 29.55 68.60 2.03 43.87 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 7 C -0.42 -23.72 9.48 67.92 0.64 -23.08 16 8 H 0.11 5.43 5.19 -2.91 -0.02 5.42 16 9 O -0.23 -13.41 9.75 -22.04 -0.21 -13.62 16 10 C 0.12 5.89 6.65 22.63 0.15 6.04 16 11 C -0.24 -10.13 9.15 22.36 0.20 -9.92 16 12 C -0.05 -1.76 9.42 22.46 0.21 -1.55 16 13 C -0.14 -4.42 5.88 -20.02 -0.12 -4.54 16 14 C -0.03 -0.89 5.87 -20.06 -0.12 -1.00 16 15 C -0.10 -2.16 9.42 22.52 0.21 -1.95 16 16 C -0.11 -1.89 10.03 22.21 0.22 -1.67 16 17 C -0.09 -1.51 9.78 22.45 0.22 -1.29 16 18 C -0.11 -2.46 6.11 22.59 0.14 -2.32 16 19 S -0.14 -2.68 25.77 -56.49 -1.46 -4.13 16 20 C -0.09 -2.17 9.17 22.63 0.21 -1.97 16 21 C -0.06 -1.93 9.42 22.46 0.21 -1.72 16 22 C -0.20 -8.55 9.98 22.36 0.22 -8.33 16 23 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.13 5.31 5.62 -2.91 -0.02 5.29 16 25 H 0.15 3.81 6.19 -2.91 -0.02 3.79 16 26 H 0.14 2.53 6.19 -2.91 -0.02 2.51 16 27 H 0.16 1.59 8.06 -2.92 -0.02 1.57 16 28 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.08 1.46 9.07 73.35 0.67 2.13 16 30 H 0.13 3.15 6.20 -2.91 -0.02 3.13 16 31 H 0.15 4.03 6.20 -2.91 -0.02 4.01 16 32 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -68.03 293.07 5.37 -62.66 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 1.84 Total: 20.63 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 2.88 Total: -54.04 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.30 Total: -55.37 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.21 Total: -13.62 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -1.46 Total: -4.13 kcal Total: -68.03 5.37 -62.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.853 kcal (2) G-P(sol) polarization free energy of solvation -68.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds