Wall clock time and date at job start Mon Mar 30 2020 01:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38222 * 120.00101 * 264.99934 * 12 11 10 14 14 C 1.38200 * 120.03763 * 179.97438 * 13 12 11 15 15 C 1.38388 * 120.04039 * 359.97438 * 14 13 12 16 16 Cl 1.73602 * 120.00127 * 180.02562 * 15 14 13 17 17 C 1.38294 * 119.99636 * 0.02562 * 15 14 13 18 18 C 1.50699 * 120.01660 * 179.97438 * 17 15 14 19 19 O 1.42894 * 109.47261 * 89.99949 * 18 17 15 20 20 C 1.38451 * 119.99686 * 84.72198 * 12 11 10 21 21 F 1.35094 * 120.01872 * 0.02637 * 20 12 11 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.08003 * 119.97894 * 0.02562 * 13 12 11 30 30 H 1.08000 * 119.97981 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.47162 * 209.99804 * 18 17 15 32 32 H 1.09001 * 109.47158 * 329.99869 * 18 17 15 33 33 H 0.96700 * 114.00123 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 6 2.8287 -6.7257 -1.1922 14 6 3.7271 -7.7758 -1.1937 15 6 4.2588 -8.2343 -0.0011 16 17 5.3878 -9.5531 -0.0043 17 6 3.8908 -7.6420 1.1931 18 6 4.4691 -8.1413 2.4920 19 8 5.6715 -7.4266 2.7841 20 6 2.9942 -6.5869 1.1942 21 9 2.6377 -6.0040 2.3596 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 2.4152 -6.3678 -2.1235 30 1 4.0151 -8.2383 -2.1262 31 1 3.7488 -7.9838 3.2948 32 1 4.6905 -9.2051 2.4060 33 1 6.0990 -7.6963 3.6084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066789.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:12 Heat of formation + Delta-G solvation = -100.892840 kcal Electronic energy + Delta-G solvation = -18114.129488 eV Core-core repulsion = 14886.291818 eV Total energy + Delta-G solvation = -3227.837670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.87176 -39.56470 -37.00090 -36.67482 -34.74675 -32.73026 -31.55256 -30.23138 -26.88840 -26.27465 -23.79467 -22.18376 -21.11916 -20.06415 -17.73461 -17.69157 -17.09362 -16.30021 -15.67060 -15.52522 -14.71849 -14.45285 -14.42810 -13.98303 -13.74026 -13.44277 -13.29354 -12.56343 -12.45991 -12.28097 -11.90669 -11.41603 -11.30521 -11.25155 -10.98622 -10.76965 -10.64988 -10.48074 -10.20757 -9.69699 -9.39614 -9.11885 -8.98436 -8.46955 -8.32801 -5.98041 -4.00092 0.86100 0.96644 1.86169 3.26070 3.33848 3.39933 3.44317 4.09549 4.24881 4.47951 4.53708 4.64911 4.81329 5.04442 5.15570 5.22005 5.37856 5.39902 5.56689 5.87939 5.91467 5.95206 6.00058 6.22576 6.27736 6.66774 6.72633 6.84877 7.11784 7.41701 7.69056 7.82915 8.01927 8.44930 9.06812 9.63927 11.13332 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.028947 B = 0.003805 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.040495 B = 7356.245663 C = 7613.920544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.104 4.104 11 C -0.085 4.085 12 C -0.095 4.095 13 C -0.074 4.074 14 C -0.122 4.122 15 C -0.004 4.004 16 Cl -0.062 7.062 17 C -0.123 4.123 18 C 0.117 3.883 19 O -0.558 6.558 20 C 0.132 3.868 21 F -0.123 7.123 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 -20.714 1.278 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.123 4.123 12 C -0.096 4.096 13 C -0.092 4.092 14 C -0.141 4.141 15 C -0.031 4.031 16 Cl -0.033 7.033 17 C -0.125 4.125 18 C 0.040 3.960 19 O -0.364 6.364 20 C 0.112 3.888 21 F -0.101 7.101 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.453 -20.397 0.774 21.730 hybrid contribution 0.613 0.647 0.718 1.144 sum 8.066 -19.751 1.492 21.386 Atomic orbital electron populations 1.69964 1.06043 1.26567 1.51019 1.25017 0.94843 0.99230 0.95344 0.86602 0.79907 0.83477 0.78092 1.20665 1.21216 1.19855 1.21259 0.93073 0.91074 1.50400 0.92707 1.19106 0.93927 0.91203 0.97291 1.21642 0.99117 0.92639 1.00730 1.20811 0.95892 0.92153 1.03399 1.20427 0.99407 0.98366 0.91425 1.21005 0.96075 0.94203 0.97921 1.21063 0.98204 0.97994 0.96799 1.20421 0.95519 0.93342 0.93805 1.98355 1.60111 1.46135 1.98717 1.19343 1.00058 0.98140 0.94986 1.20817 0.87130 0.95158 0.92920 1.86595 1.39208 1.64572 1.46047 1.17168 0.96910 0.92733 0.81967 1.91525 1.90128 1.82696 1.45769 0.93030 0.96506 0.96486 0.93181 0.93088 0.90424 0.90716 0.83713 0.84253 0.92140 0.91822 0.77209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.10 -2.18 5.13 -26.74 -0.14 -2.31 16 11 C -0.09 -1.44 5.11 -27.88 -0.14 -1.59 16 12 C -0.10 -1.43 5.14 -104.55 -0.54 -1.96 16 13 C -0.07 -0.91 9.68 -39.60 -0.38 -1.29 16 14 C -0.12 -1.38 9.83 -39.54 -0.39 -1.76 16 15 C 0.00 -0.05 6.31 -39.51 -0.25 -0.30 16 16 Cl -0.06 -0.66 27.30 -51.86 -1.42 -2.08 16 17 C -0.12 -1.68 5.52 -104.52 -0.58 -2.25 16 18 C 0.12 1.33 6.59 36.01 0.24 1.56 16 19 O -0.56 -6.64 13.64 -35.23 -0.48 -7.12 16 20 C 0.13 2.03 7.18 -39.42 -0.28 1.74 16 21 F -0.12 -2.05 15.79 2.25 0.04 -2.02 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 28 H 0.07 1.29 7.80 -51.93 -0.41 0.88 16 29 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 32 H 0.06 0.60 6.90 -51.93 -0.36 0.24 16 33 H 0.38 2.50 9.12 45.56 0.42 2.91 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -32.49 305.17 -7.80 -40.29 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -3.24 Total: -2.69 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -3.01 Total: -21.50 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.48 Total: -7.12 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.42 Total: -2.08 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.49 -7.80 -40.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066789.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.604 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds