Wall clock time and date at job start Mon Mar 30 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38222 * 120.00101 * 264.99934 * 12 11 10 14 14 C 1.38200 * 120.03763 * 179.97438 * 13 12 11 15 15 C 1.38388 * 120.04039 * 359.97438 * 14 13 12 16 16 Cl 1.73602 * 120.00127 * 180.02562 * 15 14 13 17 17 C 1.38294 * 119.99636 * 0.02562 * 15 14 13 18 18 C 1.50699 * 120.01660 * 179.97438 * 17 15 14 19 19 O 1.42894 * 109.47261 * 89.99949 * 18 17 15 20 20 C 1.38451 * 119.99686 * 84.72198 * 12 11 10 21 21 F 1.35094 * 120.01872 * 0.02637 * 20 12 11 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.08003 * 119.97894 * 0.02562 * 13 12 11 30 30 H 1.08000 * 119.97981 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.47162 * 209.99804 * 18 17 15 32 32 H 1.09001 * 109.47158 * 329.99869 * 18 17 15 33 33 H 0.96700 * 114.00123 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 6 2.8287 -6.7257 -1.1922 14 6 3.7271 -7.7758 -1.1937 15 6 4.2588 -8.2343 -0.0011 16 17 5.3878 -9.5531 -0.0043 17 6 3.8908 -7.6420 1.1931 18 6 4.4691 -8.1413 2.4920 19 8 5.6715 -7.4266 2.7841 20 6 2.9942 -6.5869 1.1942 21 9 2.6377 -6.0040 2.3596 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 2.4152 -6.3678 -2.1235 30 1 4.0151 -8.2383 -2.1262 31 1 3.7488 -7.9838 3.2948 32 1 4.6905 -9.2051 2.4060 33 1 6.0990 -7.6963 3.6084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066789.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:11 Heat of formation + Delta-G solvation = -121.136705 kcal Electronic energy + Delta-G solvation = -18115.007328 eV Core-core repulsion = 14886.291818 eV Total energy + Delta-G solvation = -3228.715510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.06086 -40.56640 -37.97073 -37.56045 -36.38170 -34.57181 -32.68347 -31.69564 -28.57457 -27.21071 -25.55848 -23.26567 -22.53107 -21.63746 -18.80711 -18.56150 -18.47020 -18.13315 -16.76270 -16.69342 -16.46959 -15.80203 -15.59422 -15.20431 -14.97891 -14.52819 -14.45251 -14.19677 -13.96614 -13.48737 -13.22201 -12.94837 -12.78375 -12.67393 -12.44433 -12.29160 -12.09122 -11.90103 -11.51583 -11.35971 -11.16802 -11.03463 -10.55637 -9.99101 -9.59447 -8.20627 -6.31683 -0.13893 -0.05345 0.93613 1.39234 1.40717 1.52020 2.26536 2.41018 3.12251 3.14560 3.28886 3.55182 3.69402 3.88505 4.05137 4.19042 4.29871 4.40737 4.43591 4.44488 4.71206 4.75528 4.96404 4.98655 5.02878 5.16710 5.20287 5.30290 5.50560 5.63513 5.73865 5.84915 6.24891 6.81096 6.84501 7.37412 8.91061 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.028947 B = 0.003805 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.040495 B = 7356.245663 C = 7613.920544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.089 4.089 11 C -0.075 4.075 12 C -0.113 4.113 13 C -0.069 4.069 14 C -0.111 4.111 15 C -0.008 4.008 16 Cl -0.044 7.044 17 C -0.134 4.134 18 C 0.117 3.883 19 O -0.580 6.580 20 C 0.106 3.894 21 F -0.140 7.140 22 H 0.264 0.736 23 H 0.001 0.999 24 H -0.010 1.010 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.169 0.831 30 H 0.172 0.828 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.197 -21.651 0.236 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.112 4.112 12 C -0.114 4.114 13 C -0.087 4.087 14 C -0.130 4.130 15 C -0.035 4.035 16 Cl -0.015 7.015 17 C -0.135 4.135 18 C 0.039 3.961 19 O -0.390 6.390 20 C 0.086 3.914 21 F -0.119 7.119 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.008 0.992 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.186 0.814 30 H 0.190 0.810 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.998 -21.356 -0.255 23.176 hybrid contribution 0.172 0.848 1.042 1.354 sum 9.170 -20.509 0.787 22.479 Atomic orbital electron populations 1.70087 1.07694 1.27803 1.51618 1.25953 0.95788 1.03245 0.94654 0.85472 0.78575 0.78515 0.78658 1.19419 1.20561 1.19141 1.21693 0.93412 0.92609 1.50692 0.92647 1.19011 0.94332 0.92740 0.95127 1.21387 0.97970 0.93112 1.00225 1.20572 0.96038 0.90994 1.03616 1.20293 0.99962 0.98588 0.92553 1.21281 0.95732 0.93953 0.97692 1.21426 0.96791 0.97020 0.97727 1.20639 0.95498 0.93558 0.93775 1.98363 1.59371 1.45102 1.98679 1.19612 0.99672 0.97656 0.96590 1.20881 0.87077 0.95970 0.92132 1.86529 1.39450 1.65267 1.47732 1.17475 0.98310 0.93965 0.81621 1.91472 1.90496 1.83207 1.46721 0.92694 0.98026 0.99207 0.94666 0.92414 0.88918 0.91892 0.81384 0.81040 0.91948 0.89822 0.74790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.34 4.97 29.84 0.15 1.49 16 10 C -0.09 -3.83 5.13 30.59 0.16 -3.67 16 11 C -0.07 -2.56 5.11 29.85 0.15 -2.41 16 12 C -0.11 -3.31 5.14 -19.82 -0.10 -3.41 16 13 C -0.07 -1.54 9.68 22.26 0.22 -1.32 16 14 C -0.11 -2.17 9.83 22.30 0.22 -1.95 16 15 C -0.01 -0.17 6.31 22.32 0.14 -0.03 16 16 Cl -0.04 -0.82 27.30 -2.72 -0.07 -0.90 16 17 C -0.13 -3.48 5.52 -19.80 -0.11 -3.59 16 18 C 0.12 2.51 6.59 71.24 0.47 2.98 16 19 O -0.58 -13.13 13.64 -148.98 -2.03 -15.17 16 20 C 0.11 3.25 7.18 22.37 0.16 3.41 16 21 F -0.14 -4.87 15.79 44.97 0.71 -4.16 16 22 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 23 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.09 2.83 8.05 -2.39 -0.02 2.81 16 28 H 0.06 2.26 7.80 -2.39 -0.02 2.24 16 29 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.06 1.29 7.65 -2.39 -0.02 1.27 16 32 H 0.08 1.41 6.90 -2.39 -0.02 1.40 16 33 H 0.40 4.75 9.12 -74.06 -0.68 4.07 16 Total: -1.00 -70.45 305.17 3.52 -66.94 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 0.46 Total: 3.00 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 2.15 Total: -39.77 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -2.03 Total: -15.17 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.71 Total: -4.16 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.07 Total: -0.90 kcal Total: -70.45 3.52 -66.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066789.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.200 kcal (2) G-P(sol) polarization free energy of solvation -70.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds