Wall clock time and date at job start Mon Mar 30 2020 01:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33388 * 125.20439 * 2 1 4 4 C 1.38423 * 114.92257 * 180.02562 * 3 2 1 5 5 C 1.50695 * 122.54110 * 179.97438 * 4 3 2 6 6 S 1.81397 * 109.47452 * 89.99438 * 5 4 3 7 7 O 1.42099 * 109.47037 * 296.38957 * 6 5 4 8 8 C 1.81404 * 103.00143 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46946 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47291 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00162 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99868 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47023 * 90.00014 * 15 13 11 17 17 H 1.48496 * 109.47251 * 210.00457 * 15 13 11 18 18 H 1.48498 * 109.47139 * 330.00202 * 15 13 11 19 19 C 1.33389 * 114.91940 * 0.24368 * 4 3 2 20 20 S 1.75880 * 109.59425 * 359.63488 * 19 4 3 21 21 H 1.08998 * 109.46991 * 90.00290 * 1 2 3 22 22 H 1.08995 * 109.47164 * 209.99982 * 1 2 3 23 23 H 1.08997 * 109.46922 * 330.00687 * 1 2 3 24 24 H 1.08001 * 122.53769 * 0.02562 * 3 2 1 25 25 H 1.09007 * 109.47042 * 329.99624 * 5 4 3 26 26 H 1.09007 * 109.47150 * 210.00063 * 5 4 3 27 27 H 1.09002 * 109.47124 * 60.00087 * 8 6 5 28 28 H 1.09001 * 109.46975 * 300.00209 * 8 6 5 29 29 H 1.09001 * 109.47194 * 299.99756 * 9 8 6 30 30 H 1.08992 * 109.47399 * 59.99928 * 9 8 6 31 31 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 32 32 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 33 33 H 0.96996 * 119.99309 * 179.97438 * 14 13 11 34 34 H 1.08000 * 125.20192 * 179.75744 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6623 1.9481 -0.0012 6 16 5.0740 2.3921 1.7087 7 8 3.9197 2.9121 2.3541 8 6 6.2986 3.7146 1.5034 9 6 6.7545 4.2055 2.8790 10 6 7.7868 5.3214 2.7058 11 6 8.2354 5.8054 4.0606 12 1 7.8249 5.3618 4.9557 13 6 9.1699 6.8145 4.1575 14 7 9.5610 7.2373 5.3399 15 14 9.8804 7.5814 2.6095 16 1 9.0414 8.7359 2.1990 17 1 11.2650 8.0462 2.8779 18 1 9.8996 6.5716 1.5208 19 6 3.9751 -0.4477 -0.0062 20 16 2.5210 -1.4372 -0.0006 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.8669 2.0894 0.0004 25 1 4.2563 2.8195 -0.5151 26 1 5.5619 1.6096 -0.5154 27 1 5.8512 4.5416 0.9520 28 1 7.1572 3.3323 0.9515 29 1 5.8960 4.5878 3.4312 30 1 7.2019 3.3784 3.4300 31 1 8.6454 4.9395 2.1534 32 1 7.3390 6.1485 2.1549 33 1 10.2187 7.9469 5.4080 34 1 4.9862 -0.8271 -0.0112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262166533.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:57 Heat of formation + Delta-G solvation = -25.306842 kcal Electronic energy + Delta-G solvation = -15638.606933 eV Core-core repulsion = 12982.303800 eV Total energy + Delta-G solvation = -2656.303133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 272.065 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.54724 -35.49043 -34.55590 -32.93542 -32.07935 -28.80625 -27.99884 -26.85400 -23.35290 -21.90729 -20.21504 -19.14781 -17.55847 -17.13236 -16.68526 -15.45827 -15.38241 -14.95618 -14.39174 -14.07387 -13.96343 -13.67024 -13.49740 -13.00167 -12.77690 -12.62408 -12.31473 -12.08890 -11.95277 -11.80851 -11.58351 -11.13409 -10.95598 -10.83546 -10.55733 -9.96930 -9.77580 -9.57050 -9.20257 -8.78901 -8.54624 -8.52242 -7.95250 -6.04729 -4.02956 0.73884 1.41775 1.55145 1.77515 2.60787 2.83309 3.29605 3.36753 3.39553 3.93613 4.44161 4.47027 4.75861 4.93868 5.01953 5.15933 5.22326 5.28260 5.36428 5.41998 5.48084 5.52509 5.67116 5.91886 6.06566 6.16164 6.29210 6.37226 6.50489 6.83948 7.24985 7.38538 7.77802 8.53239 9.00466 9.57448 11.08793 Molecular weight = 272.06amu Principal moments of inertia in cm(-1) A = 0.050564 B = 0.003093 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.620697 B = 9049.532061 C = 9146.849667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.176 4.176 3 C -0.133 4.133 4 C -0.070 4.070 5 C -0.396 4.396 6 S 1.238 4.762 7 O -0.840 6.840 8 C -0.441 4.441 9 C -0.085 4.085 10 C -0.008 4.008 11 C -0.523 4.523 12 H 0.073 0.927 13 C 0.066 3.934 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.215 4.215 20 S 0.092 5.908 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.137 0.863 25 H 0.093 0.907 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.009 0.991 33 H 0.263 0.737 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 -19.266 -14.408 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.293 4.293 3 C -0.163 4.163 4 C -0.084 4.084 5 C -0.533 4.533 6 S 1.438 4.562 7 O -0.835 6.835 8 C -0.580 4.580 9 C -0.124 4.124 10 C -0.047 4.047 11 C -0.561 4.561 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.352 4.352 20 S 0.356 5.644 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.155 0.845 25 H 0.112 0.888 26 H 0.143 0.857 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.080 -21.088 -13.492 28.246 hybrid contribution 0.029 3.937 -1.971 4.403 sum -13.051 -17.151 -15.463 26.525 Atomic orbital electron populations 1.20346 0.87801 1.03348 1.02669 1.24427 1.00034 0.95598 1.09288 1.20033 0.92552 0.99605 1.04124 1.18112 0.93500 0.93245 1.03501 1.26540 1.03328 1.01460 1.21932 1.70713 0.93318 1.06917 0.85277 1.93119 1.47336 1.80364 1.62668 1.27754 1.11560 1.12820 1.05851 1.21123 1.00088 0.99947 0.91255 1.19570 0.93903 0.93362 0.97862 1.21172 1.23525 1.19193 0.92184 0.90880 1.25038 0.96203 0.96407 0.95883 1.69920 1.32257 1.29059 1.22973 0.86769 0.78406 0.79866 0.84175 1.20418 1.21322 1.19001 1.25425 1.02247 0.95633 1.11888 1.84138 0.96870 1.09491 1.73870 0.90774 0.91192 0.90427 0.84547 0.88838 0.85696 0.90133 0.86864 0.92263 0.91485 0.96294 0.97257 0.92721 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.38 36.01 0.37 -0.27 16 2 C -0.18 -1.83 6.51 -36.00 -0.23 -2.06 16 3 C -0.13 -1.59 9.85 -41.21 -0.41 -2.00 16 4 C -0.07 -0.77 5.06 -106.25 -0.54 -1.31 16 5 C -0.40 -4.03 6.18 36.00 0.22 -3.81 16 6 S 1.24 15.53 13.14 -107.50 -1.41 14.12 16 7 O -0.84 -15.98 18.14 -35.23 -0.64 -16.62 16 8 C -0.44 -6.51 5.92 37.16 0.22 -6.29 16 9 C -0.09 -1.68 5.16 -26.73 -0.14 -1.82 16 10 C -0.01 -0.20 4.04 -27.88 -0.11 -0.31 16 11 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16 12 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 15 Si 0.88 21.84 27.47 -169.99 -4.67 17.18 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 19 C -0.21 -1.96 10.98 29.04 0.32 -1.64 16 20 S 0.09 0.83 23.33 -107.50 -2.51 -1.67 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 25 H 0.09 1.02 8.13 -51.92 -0.42 0.60 16 26 H 0.12 0.87 8.12 -51.92 -0.42 0.45 16 27 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 28 H 0.11 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 32 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 316.41 15.07 4.77 4.77 Total: -1.00 -36.64 316.41 -9.41 -46.05 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -5.00 Total: -3.34 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: -0.72 Total: -33.11 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.64 Total: -16.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: 16.37 SS G_CDS: -3.92 Total: 12.45 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.64 -9.41 -46.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262166533.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.741 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds