Wall clock time and date at job start Mon Mar 30 2020 01:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33388 * 125.20439 * 2 1 4 4 C 1.38423 * 114.92257 * 180.02562 * 3 2 1 5 5 C 1.50695 * 122.54110 * 179.97438 * 4 3 2 6 6 S 1.81397 * 109.47452 * 89.99438 * 5 4 3 7 7 O 1.42099 * 109.47037 * 296.38957 * 6 5 4 8 8 C 1.81404 * 103.00143 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46946 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47291 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00162 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99868 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47023 * 90.00014 * 15 13 11 17 17 H 1.48496 * 109.47251 * 210.00457 * 15 13 11 18 18 H 1.48498 * 109.47139 * 330.00202 * 15 13 11 19 19 C 1.33389 * 114.91940 * 0.24368 * 4 3 2 20 20 S 1.75880 * 109.59425 * 359.63488 * 19 4 3 21 21 H 1.08998 * 109.46991 * 90.00290 * 1 2 3 22 22 H 1.08995 * 109.47164 * 209.99982 * 1 2 3 23 23 H 1.08997 * 109.46922 * 330.00687 * 1 2 3 24 24 H 1.08001 * 122.53769 * 0.02562 * 3 2 1 25 25 H 1.09007 * 109.47042 * 329.99624 * 5 4 3 26 26 H 1.09007 * 109.47150 * 210.00063 * 5 4 3 27 27 H 1.09002 * 109.47124 * 60.00087 * 8 6 5 28 28 H 1.09001 * 109.46975 * 300.00209 * 8 6 5 29 29 H 1.09001 * 109.47194 * 299.99756 * 9 8 6 30 30 H 1.08992 * 109.47399 * 59.99928 * 9 8 6 31 31 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 32 32 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 33 33 H 0.96996 * 119.99309 * 179.97438 * 14 13 11 34 34 H 1.08000 * 125.20192 * 179.75744 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6623 1.9481 -0.0012 6 16 5.0740 2.3921 1.7087 7 8 3.9197 2.9121 2.3541 8 6 6.2986 3.7146 1.5034 9 6 6.7545 4.2055 2.8790 10 6 7.7868 5.3214 2.7058 11 6 8.2354 5.8054 4.0606 12 1 7.8249 5.3618 4.9557 13 6 9.1699 6.8145 4.1575 14 7 9.5610 7.2373 5.3399 15 14 9.8804 7.5814 2.6095 16 1 9.0414 8.7359 2.1990 17 1 11.2650 8.0462 2.8779 18 1 9.8996 6.5716 1.5208 19 6 3.9751 -0.4477 -0.0062 20 16 2.5210 -1.4372 -0.0006 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.8669 2.0894 0.0004 25 1 4.2563 2.8195 -0.5151 26 1 5.5619 1.6096 -0.5154 27 1 5.8512 4.5416 0.9520 28 1 7.1572 3.3323 0.9515 29 1 5.8960 4.5878 3.4312 30 1 7.2019 3.3784 3.4300 31 1 8.6454 4.9395 2.1534 32 1 7.3390 6.1485 2.1549 33 1 10.2187 7.9469 5.4080 34 1 4.9862 -0.8271 -0.0112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262166533.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:56 Heat of formation + Delta-G solvation = -50.275920 kcal Electronic energy + Delta-G solvation = -15639.689673 eV Core-core repulsion = 12982.303800 eV Total energy + Delta-G solvation = -2657.385873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 272.065 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.30472 -36.78295 -36.32502 -34.13707 -33.64796 -29.99981 -29.39511 -27.56869 -25.11651 -22.79590 -21.89229 -19.93242 -18.99952 -18.40662 -17.95925 -16.67475 -16.36059 -16.22180 -16.05625 -15.22101 -14.96537 -14.74609 -14.64562 -14.21388 -13.91851 -13.75566 -13.69166 -13.31882 -13.01689 -12.86919 -12.69313 -12.50826 -12.41149 -12.12272 -11.79639 -11.70578 -11.54132 -11.35369 -10.95830 -10.77897 -9.53844 -9.45685 -8.92507 -8.30280 -6.35252 -0.02292 0.55920 0.70841 1.03816 1.35447 1.37126 1.49659 1.69711 1.92976 2.35711 2.89343 3.04871 3.73398 4.02497 4.06443 4.16028 4.22680 4.34413 4.47910 4.57823 4.65786 4.69151 4.81080 4.81625 5.02636 5.04686 5.09274 5.15789 5.41614 5.46335 5.50972 5.54736 5.65365 6.27213 6.73143 7.29422 8.86860 Molecular weight = 272.06amu Principal moments of inertia in cm(-1) A = 0.050564 B = 0.003093 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.620697 B = 9049.532061 C = 9146.849667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.189 4.189 3 C -0.165 4.165 4 C -0.099 4.099 5 C -0.380 4.380 6 S 1.283 4.717 7 O -0.913 6.913 8 C -0.440 4.440 9 C -0.087 4.087 10 C -0.008 4.008 11 C -0.540 4.540 12 H 0.029 0.971 13 C 0.000 4.000 14 N -0.953 5.953 15 Si 0.955 3.045 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.236 1.236 19 C -0.204 4.204 20 S 0.120 5.880 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.170 0.830 27 H 0.071 0.929 28 H 0.156 0.844 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.007 0.993 33 H 0.267 0.733 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -21.225 -17.614 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.307 4.307 3 C -0.195 4.195 4 C -0.112 4.112 5 C -0.519 4.519 6 S 1.486 4.514 7 O -0.909 6.909 8 C -0.578 4.578 9 C -0.125 4.125 10 C -0.047 4.047 11 C -0.578 4.578 12 H 0.047 0.953 13 C -0.197 4.197 14 N -0.594 5.594 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.158 1.158 19 C -0.341 4.341 20 S 0.384 5.616 21 H 0.106 0.894 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.136 0.864 25 H 0.104 0.896 26 H 0.188 0.812 27 H 0.090 0.910 28 H 0.173 0.827 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.084 -23.045 -16.672 30.904 hybrid contribution -0.373 4.409 -0.955 4.526 sum -12.457 -18.636 -17.627 28.517 Atomic orbital electron populations 1.20438 0.86534 1.03744 1.03675 1.24793 1.01365 0.96066 1.08440 1.20165 0.93821 0.99398 1.06126 1.18203 0.93116 0.94259 1.05662 1.26383 1.05207 1.01207 1.19127 1.69841 0.91058 1.04186 0.86319 1.93007 1.50236 1.80908 1.66741 1.27706 1.13847 1.13439 1.02779 1.20992 0.97885 0.99247 0.94418 1.19557 0.95606 0.94668 0.94859 1.21585 1.23452 1.19336 0.93387 0.95267 1.26111 0.96680 0.96987 0.99877 1.70087 1.33346 1.30067 1.25908 0.85593 0.77445 0.79317 0.79886 1.20031 1.20677 1.15849 1.25913 1.03989 0.94880 1.09323 1.84061 0.96374 1.08298 1.72860 0.89410 0.89916 0.90929 0.86385 0.89633 0.81213 0.91011 0.82651 0.95642 0.90029 0.94206 0.97443 0.92463 0.77458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 10.38 71.24 0.74 -0.51 16 2 C -0.19 -3.74 6.51 24.59 0.16 -3.58 16 3 C -0.16 -3.89 9.85 21.22 0.21 -3.68 16 4 C -0.10 -1.97 5.06 -20.92 -0.11 -2.08 16 5 C -0.38 -6.62 6.18 71.23 0.44 -6.18 16 6 S 1.28 30.36 13.14 -56.49 -0.74 29.62 16 7 O -0.91 -35.64 18.14 -148.98 -2.70 -38.35 16 8 C -0.44 -11.96 5.92 71.98 0.43 -11.53 16 9 C -0.09 -3.39 5.16 30.59 0.16 -3.23 16 10 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 11 C -0.54 -31.97 9.66 25.60 0.25 -31.72 16 12 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 13 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 14 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 15 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 19 C -0.20 -3.01 10.98 66.72 0.73 -2.28 16 20 S 0.12 1.86 23.33 -56.49 -1.32 0.54 16 21 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.12 3.09 8.06 -2.91 -0.02 3.06 16 25 H 0.08 1.70 8.13 -2.39 -0.02 1.68 16 26 H 0.17 1.43 8.12 -2.39 -0.02 1.41 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.16 2.88 8.14 -2.39 -0.02 2.87 16 29 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.04 1.71 7.20 -2.39 -0.02 1.69 16 32 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 33 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -83.79 316.41 2.03 -81.77 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.01 Total: 5.51 kcal Atomic # 6 Polarization: -68.21 SS G_CDS: 3.59 Total: -64.62 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.30 Total: -60.74 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -2.70 Total: -38.35 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 16 Polarization: 32.22 SS G_CDS: -2.06 Total: 30.16 kcal Total: -83.79 2.03 -81.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262166533.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.492 kcal (2) G-P(sol) polarization free energy of solvation -83.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds