Wall clock time and date at job start Mon Mar 30 2020 00:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47129 * 2 1 4 4 C 1.50693 * 109.47232 * 120.00162 * 2 1 3 5 5 H 1.08000 * 120.00267 * 120.00359 * 4 2 1 6 6 C 1.37883 * 120.00051 * 299.99911 * 4 2 1 7 7 N 1.31517 * 119.99873 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00149 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47566 * 60.00246 * 8 6 4 10 10 H 1.48506 * 109.47147 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47250 * 300.00107 * 8 6 4 12 12 N 1.46498 * 109.47194 * 240.00210 * 2 1 3 13 13 C 1.34770 * 120.00113 * 84.99875 * 12 2 1 14 14 O 1.21578 * 120.00174 * 359.97438 * 13 12 2 15 15 C 1.47616 * 120.00199 * 179.97438 * 13 12 2 16 16 C 1.40329 * 120.59665 * 269.99825 * 15 13 12 17 17 F 1.35104 * 120.88357 * 0.02562 * 16 15 13 18 18 C 1.38756 * 118.23671 * 180.26901 * 16 15 13 19 19 C 1.38148 * 119.30325 * 359.52688 * 18 16 15 20 20 N 1.31996 * 121.15858 * 0.49096 * 19 18 16 21 21 C 1.31813 * 121.94770 * 359.73530 * 20 19 18 22 22 Cl 1.73592 * 119.72831 * 180.02562 * 21 20 19 23 23 H 1.08993 * 109.47358 * 299.99753 * 1 2 3 24 24 H 1.08999 * 109.47090 * 60.00168 * 1 2 3 25 25 H 1.09000 * 109.46714 * 179.97438 * 1 2 3 26 26 H 0.96998 * 119.99758 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99980 * 265.00137 * 12 2 1 28 28 H 1.07997 * 120.34916 * 179.73044 * 18 16 15 29 29 H 1.07999 * 119.41908 * 180.22967 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0078 10 1 1.8269 -0.4199 5.2205 11 1 1.8281 -2.5198 4.0081 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8575 1.1613 -2.4118 15 6 2.6397 -0.7139 -3.5622 16 6 4.0123 -0.7583 -3.8504 17 9 4.9119 -0.1675 -3.0336 18 6 4.4209 -1.4206 -4.9992 19 6 3.4737 -2.0173 -5.8087 20 7 2.1885 -1.9597 -5.5130 21 6 1.7476 -1.3395 -4.4366 22 17 0.0445 -1.2998 -4.1030 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7088 1.1612 3.4844 27 1 2.2490 -1.6317 -1.1526 28 1 5.4686 -1.4719 -5.2562 29 1 3.7899 -2.5365 -6.7014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263721917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:15 Heat of formation + Delta-G solvation = -75.636960 kcal Electronic energy + Delta-G solvation = -18410.438906 eV Core-core repulsion = 15080.156069 eV Total energy + Delta-G solvation = -3330.282836 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.047 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.39643 -41.62159 -40.22037 -37.92373 -36.83215 -34.49376 -33.50543 -32.68253 -30.70108 -27.38027 -26.09480 -24.83903 -23.24127 -21.55689 -19.80710 -19.20134 -18.90979 -17.86092 -17.49776 -16.99288 -16.49424 -16.41729 -15.70045 -15.60306 -15.33877 -15.26485 -14.95728 -14.46814 -13.75064 -13.28810 -13.08130 -12.93115 -12.89841 -12.77471 -12.54231 -12.30354 -12.19359 -11.47968 -11.18742 -10.96560 -10.83261 -10.62436 -10.33243 -9.94618 -8.20011 -6.38087 -0.61058 -0.40063 0.45848 1.36456 1.44354 1.46515 1.54305 2.09781 2.23892 2.43632 2.58334 3.10324 3.31163 3.41085 3.57490 3.77961 4.12241 4.42037 4.65355 4.70872 4.88863 5.03566 5.20588 5.34121 5.48905 5.60765 5.80789 6.03668 6.35042 6.64275 6.70840 7.16131 7.35862 8.86319 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.005695 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.643202 B = 4915.789951 C = 5499.727601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.264 1.264 12 N -0.685 5.685 13 C 0.555 3.445 14 O -0.576 6.576 15 C -0.216 4.216 16 C 0.170 3.830 17 F -0.122 7.122 18 C -0.175 4.175 19 C 0.172 3.828 20 N -0.491 5.491 21 C 0.221 3.779 22 Cl -0.014 7.014 23 H 0.070 0.930 24 H 0.013 0.987 25 H 0.041 0.959 26 H 0.267 0.733 27 H 0.404 0.596 28 H 0.208 0.792 29 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.017 -9.557 -16.256 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.188 1.188 12 N -0.333 5.333 13 C 0.339 3.661 14 O -0.457 6.457 15 C -0.224 4.224 16 C 0.143 3.857 17 F -0.100 7.100 18 C -0.195 4.195 19 C 0.016 3.984 20 N -0.203 5.203 21 C 0.057 3.943 22 Cl 0.014 6.986 23 H 0.089 0.911 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.238 0.762 28 H 0.225 0.775 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.983 -8.969 -16.588 19.784 hybrid contribution 0.547 0.321 1.877 1.981 sum 6.530 -8.648 -14.711 18.271 Atomic orbital electron populations 1.21874 0.97749 0.99618 0.99783 1.18474 0.91489 0.91985 0.81173 0.97916 1.21455 1.32981 1.13730 0.90634 0.90909 1.25790 0.94749 0.95548 1.02257 1.70039 1.36693 1.23790 1.24828 0.85373 0.78652 0.78711 0.77464 1.19554 1.21028 1.18839 1.46301 1.63616 1.14045 1.09298 1.18108 0.78182 0.86292 0.83495 1.90761 1.52406 1.17138 1.85361 1.20763 0.94436 1.07113 1.00052 1.18219 0.83821 0.93319 0.90389 1.91606 1.65648 1.81159 1.71596 1.22762 1.06023 0.98658 0.92071 1.23760 0.84176 0.91689 0.98755 1.67260 1.19984 1.17513 1.15563 1.21406 0.87576 0.94150 0.91215 1.98456 1.09857 1.96572 1.93683 0.91127 0.96797 0.94020 0.92390 0.76153 0.77503 0.74668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 15 2 C 0.27 14.39 2.56 44.24 0.11 14.51 15 3 H 0.00 0.18 7.58 -2.39 -0.02 0.16 15 4 C -0.55 -29.42 8.73 25.60 0.22 -29.19 15 5 H 0.07 3.64 7.74 -2.91 -0.02 3.61 15 6 C 0.02 0.92 5.30 84.66 0.45 1.37 15 7 N -0.92 -52.63 11.32 21.45 0.24 -52.38 15 8 Si 0.97 42.04 29.54 68.60 2.03 44.07 15 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 11 H -0.26 -10.83 7.11 99.48 0.71 -10.12 15 12 N -0.69 -30.17 5.07 -449.22 -2.28 -32.45 15 13 C 0.56 24.01 6.01 86.72 0.52 24.53 15 14 O -0.58 -29.98 16.77 -3.96 -0.07 -30.05 15 15 C -0.22 -7.11 5.65 -19.94 -0.11 -7.23 15 16 C 0.17 4.46 7.37 22.90 0.17 4.63 15 17 F -0.12 -3.69 16.93 44.97 0.76 -2.93 15 18 C -0.18 -2.48 10.09 22.37 0.23 -2.25 15 19 C 0.17 2.22 11.16 84.65 0.94 3.16 15 20 N -0.49 -11.09 10.32 -185.72 -1.92 -13.01 15 21 C 0.22 6.51 7.31 85.05 0.62 7.13 15 22 Cl -0.01 -0.46 28.20 -2.72 -0.08 -0.54 15 23 H 0.07 3.95 6.07 -2.39 -0.01 3.94 15 24 H 0.01 0.67 8.14 -2.39 -0.02 0.65 15 25 H 0.04 1.97 8.14 -2.39 -0.02 1.96 15 26 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 27 H 0.40 15.43 8.52 -92.71 -0.79 14.64 15 28 H 0.21 1.03 8.06 -2.91 -0.02 1.01 15 29 H 0.24 0.36 8.06 -2.91 -0.02 0.33 15 Total: -1.00 -71.90 283.54 2.94 -68.97 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.42 Total: 7.78 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 3.82 Total: 10.54 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -3.95 Total: -97.84 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.07 Total: -30.05 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.76 Total: -2.93 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -71.90 2.94 -68.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263721917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.672 kcal (2) G-P(sol) polarization free energy of solvation -71.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds