Wall clock time and date at job start Mon Mar 30 2020 01:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21603 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.47452 * 119.99873 * 179.97438 * 16 15 14 19 19 C 1.37980 * 124.15223 * 179.97438 * 18 16 15 20 20 S 1.72102 * 104.03322 * 179.97438 * 19 18 16 21 21 N 1.56403 * 96.15211 * 359.97438 * 20 19 18 22 22 N 1.27417 * 109.87669 * 359.74974 * 21 20 19 23 23 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 25 25 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 26 26 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 27 27 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 28 28 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 29 29 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 30 30 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 31 31 H 1.08005 * 127.98687 * 359.95003 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9688 -3.5536 -0.5824 12 6 2.4213 -4.0284 1.4463 13 8 1.2268 -4.2776 2.1899 14 6 1.1809 -4.7552 -0.5972 15 7 0.7348 -4.3453 -1.9310 16 6 -0.0547 -5.1607 -2.6577 17 8 -0.3965 -6.2369 -2.2064 18 6 -0.5042 -4.7478 -4.0000 19 6 -1.3114 -5.5134 -4.8162 20 16 -1.5084 -4.5512 -6.2294 21 7 -0.6350 -3.3505 -5.7379 22 7 -0.1872 -3.5904 -4.5693 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 3.0418 -4.9245 1.4445 26 1 2.9707 -3.2069 1.9060 27 1 1.3816 -4.5196 3.1134 28 1 1.7558 -5.6780 -0.6740 29 1 0.3131 -4.9198 0.0415 30 1 1.0071 -3.4867 -2.2909 31 1 -1.7239 -6.4911 -4.6149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278120359.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:50 Heat of formation + Delta-G solvation = -27.973201 kcal Electronic energy + Delta-G solvation = -18505.482503 eV Core-core repulsion = 15335.063284 eV Total energy + Delta-G solvation = -3170.419218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.12033 -40.37992 -38.59831 -36.41182 -35.25543 -33.42495 -32.92169 -30.17794 -28.25813 -26.86181 -25.67237 -24.14885 -21.84165 -21.59321 -20.18540 -19.37495 -18.15701 -17.88863 -17.17413 -17.09883 -16.77125 -16.25376 -15.97420 -15.59867 -15.23785 -14.87722 -14.57481 -14.38351 -13.68675 -13.63599 -13.08201 -13.02962 -12.77470 -12.66826 -12.22432 -11.88502 -11.74512 -11.47902 -11.23534 -11.15691 -10.97858 -10.89089 -10.70181 -10.10571 -9.00120 -7.90102 -5.18970 -0.92511 -0.02421 0.34123 0.56030 1.48561 1.49489 1.58651 2.00774 2.14582 2.57693 2.78505 3.42938 3.62216 3.66276 3.86777 3.89886 4.01791 4.36391 4.44144 4.56431 4.61928 4.84651 5.01130 5.21615 5.36069 5.54936 6.27525 6.28950 6.58404 6.98538 7.09750 7.36866 8.09427 8.33804 9.33114 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.005701 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.344764 B = 4909.813861 C = 6372.077942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.299 1.299 6 H -0.298 1.298 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.158 3.842 11 H 0.078 0.922 12 C 0.067 3.933 13 O -0.584 6.584 14 C 0.127 3.873 15 N -0.695 5.695 16 C 0.598 3.402 17 O -0.560 6.560 18 C -0.047 4.047 19 C -0.233 4.233 20 S 0.566 5.434 21 N -0.337 5.337 22 N -0.239 5.239 23 H 0.247 0.753 24 H 0.372 0.628 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.386 0.614 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.414 0.586 31 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 -14.124 -9.880 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.227 1.227 6 H -0.226 1.226 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.363 5.363 10 C 0.049 3.951 11 H 0.096 0.904 12 C -0.014 4.014 13 O -0.390 6.390 14 C 0.003 3.997 15 N -0.344 5.344 16 C 0.380 3.620 17 O -0.439 6.439 18 C -0.195 4.195 19 C -0.389 4.389 20 S 0.701 5.299 21 N -0.318 5.318 22 N -0.108 5.108 23 H 0.056 0.944 24 H 0.203 0.797 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.234 0.766 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.250 0.750 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.314 -13.218 -11.439 17.483 hybrid contribution 0.423 0.612 1.979 2.115 sum 0.109 -12.605 -9.459 15.760 Atomic orbital electron populations 1.69857 1.06705 1.25591 1.59599 1.25505 0.96172 1.00938 1.03991 0.85142 0.78487 0.80320 0.76196 1.18647 1.22677 1.22604 1.19652 0.91503 0.84855 1.40586 0.89984 1.42485 1.05349 1.00312 1.88151 1.20893 0.95104 0.85266 0.93842 0.90387 1.22840 0.86558 0.98760 0.93242 1.86520 1.32826 1.92257 1.27446 1.21566 0.98992 0.97623 0.81528 1.45938 1.49077 1.21685 1.17703 1.16907 0.78557 0.83882 0.82654 1.90767 1.58527 1.23081 1.71563 1.22597 1.04695 0.92514 0.99680 1.29280 1.01259 1.08887 0.99512 1.80920 1.34671 0.99952 1.14358 1.78316 1.17717 1.26152 1.09586 1.71639 1.19856 1.17068 1.02281 0.94414 0.79674 0.91250 0.94523 0.76604 0.89237 0.92209 0.74950 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 3 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 7 C -0.23 -12.57 9.93 84.03 0.83 -11.74 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.72 -35.46 4.51 -322.94 -1.46 -36.92 16 10 C 0.16 5.93 2.84 44.99 0.13 6.06 16 11 H 0.08 2.76 8.08 -2.39 -0.02 2.74 16 12 C 0.07 2.17 6.85 71.98 0.49 2.66 16 13 O -0.58 -19.97 12.64 -148.98 -1.88 -21.85 16 14 C 0.13 4.48 5.12 86.38 0.44 4.92 16 15 N -0.69 -25.61 5.38 -466.34 -2.51 -28.12 16 16 C 0.60 21.21 7.81 86.67 0.68 21.89 16 17 O -0.56 -21.22 16.80 -4.04 -0.07 -21.29 16 18 C -0.05 -1.44 6.87 41.36 0.28 -1.15 16 19 C -0.23 -4.74 11.21 67.76 0.76 -3.98 16 20 S 0.57 9.28 23.38 -56.49 -1.32 7.96 16 21 N -0.34 -9.64 12.49 37.02 0.46 -9.17 16 22 N -0.24 -8.11 11.24 -50.34 -0.57 -8.67 16 23 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 24 H 0.37 20.69 7.80 -92.71 -0.72 19.97 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.39 9.13 9.12 -74.05 -0.68 8.46 16 28 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.06 2.37 7.39 -2.39 -0.02 2.36 16 30 H 0.41 16.51 7.72 -92.71 -0.72 15.80 16 31 H 0.23 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -74.61 295.23 -1.85 -76.46 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.91 Total: 38.10 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 4.08 Total: 14.91 kcal Atomic # 7 Polarization: -138.90 SS G_CDS: -3.79 Total: -142.69 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.95 Total: -43.14 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 9.28 SS G_CDS: -1.32 Total: 7.96 kcal Total: -74.61 -1.85 -76.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278120359.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.490 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds