Wall clock time and date at job start Mon Mar 30 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21602 * 120.00487 * 359.97438 * 13 12 2 15 15 N 1.34784 * 119.99632 * 179.97438 * 13 12 2 16 16 C 1.40937 * 119.99915 * 179.97438 * 15 13 12 17 17 C 1.40209 * 126.08088 * 0.02562 * 16 15 13 18 18 N 1.30846 * 108.35072 * 179.97438 * 17 16 15 19 19 N 1.40076 * 108.38785 * 0.02562 * 18 17 16 20 20 C 1.46496 * 126.05826 * 180.02562 * 19 18 17 21 21 C 1.35848 * 107.87877 * 359.73479 * 19 18 17 22 22 Cl 1.73604 * 126.22821 * 180.26505 * 21 19 18 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 28 28 H 0.96995 * 119.99663 * 359.97438 * 15 13 12 29 29 H 1.07999 * 125.82508 * 359.97438 * 17 16 15 30 30 H 1.09002 * 109.46886 * 89.97836 * 20 19 18 31 31 H 1.09004 * 109.47168 * 209.96993 * 20 19 18 32 32 H 1.08996 * 109.47799 * 329.97718 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1617 2.4117 15 7 2.5959 -0.6537 3.4578 16 6 2.7310 0.0495 4.6717 17 6 2.4366 1.4047 4.8780 18 7 2.6869 1.6947 6.1291 19 7 3.1503 0.5369 6.7670 20 6 3.5435 0.4261 8.1738 21 6 3.1642 -0.4665 5.8513 22 17 3.6508 -2.1085 6.1359 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 2.2491 -1.6318 1.1527 28 1 2.8259 -1.5950 3.4143 29 1 2.0665 2.0920 4.1316 30 1 2.6757 0.1505 8.7730 31 1 4.3136 -0.3385 8.2767 32 1 3.9338 1.3836 8.5186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333262746.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:43 Heat of formation + Delta-G solvation = 26.146580 kcal Electronic energy + Delta-G solvation = -18359.729074 eV Core-core repulsion = 15189.612959 eV Total energy + Delta-G solvation = -3170.116115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.48985 -40.77316 -37.96467 -36.98941 -35.76596 -34.41888 -33.69150 -31.13463 -29.86241 -27.38860 -27.21784 -23.92421 -22.67586 -22.03543 -21.42767 -19.53337 -18.84006 -17.89605 -17.33919 -16.95949 -16.65340 -16.10214 -15.76545 -15.50956 -14.91371 -14.59574 -14.35235 -13.99153 -13.68692 -13.56164 -13.06484 -12.96707 -12.85860 -12.72517 -12.66557 -12.24808 -12.10659 -11.88251 -11.82887 -11.11548 -11.05017 -10.56786 -10.36129 -9.82699 -8.74961 -8.13700 -6.30428 0.32372 0.42930 1.42852 1.44021 1.48814 1.50281 1.59867 1.91437 2.38973 2.45925 3.17171 3.45136 3.53953 3.94884 4.19902 4.39992 4.50250 4.66213 4.79849 4.98537 5.05972 5.15083 5.42657 5.62193 5.65661 5.67961 5.71576 5.88268 6.13538 6.20681 6.41971 6.77267 7.24450 7.37942 7.70085 8.92729 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.003948 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.583676 B = 7091.318571 C = 7596.948824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.004 0.996 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.713 5.713 13 C 0.699 3.301 14 O -0.621 6.621 15 N -0.648 5.648 16 C 0.039 3.961 17 C 0.041 3.959 18 N -0.278 5.278 19 N -0.361 5.361 20 C 0.091 3.909 21 C 0.079 3.921 22 Cl 0.025 6.975 23 H 0.067 0.933 24 H 0.013 0.987 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.404 0.596 28 H 0.419 0.581 29 H 0.195 0.805 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -8.025 19.440 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.022 0.978 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.365 5.365 13 C 0.399 3.601 14 O -0.502 6.502 15 N -0.298 5.298 16 C -0.068 4.068 17 C -0.145 4.145 18 N -0.102 5.102 19 N -0.150 5.150 20 C -0.048 4.048 21 C -0.077 4.077 22 Cl 0.053 6.947 23 H 0.086 0.914 24 H 0.032 0.968 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.239 0.761 28 H 0.256 0.744 29 H 0.212 0.788 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.861 -6.131 20.313 22.013 hybrid contribution 0.286 -1.634 -1.597 2.303 sum 6.147 -7.766 18.716 21.175 Atomic orbital electron populations 1.21929 0.98355 0.99442 0.99643 1.18281 0.90909 0.91847 0.80440 0.97827 1.21536 1.32584 1.13600 0.90651 0.90753 1.25764 0.94930 0.95571 1.02208 1.70055 1.37013 1.23843 1.24577 0.85343 0.78948 0.77989 0.78022 1.19720 1.21383 1.18848 1.45395 1.68936 1.13982 1.08190 1.16058 0.78496 0.84844 0.80726 1.90737 1.58705 1.16122 1.84635 1.41772 1.68919 1.13479 1.05649 1.17083 1.11126 0.92791 0.85823 1.24271 1.01017 0.95188 0.94000 1.77488 1.19760 1.05650 1.07333 1.48721 1.51356 1.04355 1.10523 1.22345 1.02794 1.06208 0.73449 1.20746 1.10284 0.86434 0.90247 1.98396 1.89828 1.10327 1.96109 0.91417 0.96790 0.94168 0.92573 0.76137 0.74357 0.78840 0.88616 0.87270 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.29 14.78 2.56 44.25 0.11 14.89 16 3 H 0.00 0.23 7.58 -2.39 -0.02 0.21 16 4 C -0.55 -28.37 8.73 25.60 0.22 -28.15 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -52.07 11.32 21.45 0.24 -51.83 16 8 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 N -0.71 -29.17 5.07 -461.37 -2.34 -31.51 16 13 C 0.70 28.34 8.50 179.05 1.52 29.87 16 14 O -0.62 -30.07 13.16 -4.04 -0.05 -30.12 16 15 N -0.65 -20.17 5.48 -317.55 -1.74 -21.91 16 16 C 0.04 1.22 6.90 37.60 0.26 1.47 16 17 C 0.04 1.42 10.84 85.32 0.92 2.35 16 18 N -0.28 -8.51 12.56 -56.79 -0.71 -9.22 16 19 N -0.36 -8.45 4.04 -358.28 -1.45 -9.90 16 20 C 0.09 1.10 11.32 127.77 1.45 2.55 16 21 C 0.08 1.93 7.51 83.52 0.63 2.56 16 22 Cl 0.03 0.43 28.57 -2.72 -0.08 0.36 16 23 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 24 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.40 13.61 8.55 -92.71 -0.79 12.82 16 28 H 0.42 10.06 8.59 -92.71 -0.80 9.26 16 29 H 0.20 7.65 5.92 -2.91 -0.02 7.63 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.85 7.85 -2.38 -0.02 0.83 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -67.93 295.16 1.72 -66.21 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.41 Total: 23.70 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 6.23 Total: 20.70 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -6.00 Total: -124.37 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.05 Total: -30.12 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.36 kcal Total: -67.93 1.72 -66.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333262746.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.358 kcal (2) G-P(sol) polarization free energy of solvation -67.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds