Wall clock time and date at job start Mon Mar 30 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00006 * 2 1 4 4 H 1.48496 * 109.47217 * 269.99452 * 3 2 1 5 5 H 1.48504 * 109.47417 * 29.99650 * 3 2 1 6 6 H 1.48504 * 109.47294 * 149.99429 * 3 2 1 7 7 C 1.37882 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99944 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46911 * 299.99690 * 9 7 2 11 11 O 1.45202 * 109.46899 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00248 * 150.00272 * 11 9 7 13 13 O 1.20825 * 119.99842 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00042 * 179.97438 * 12 11 9 15 15 H 1.08999 * 115.55321 * 325.67474 * 14 12 11 16 16 C 1.53006 * 117.49407 * 111.37854 * 14 12 11 17 17 C 1.52997 * 59.99880 * 107.48901 * 16 14 12 18 18 F 1.39899 * 117.49810 * 252.50807 * 17 16 14 19 19 F 1.39900 * 117.49989 * 107.48799 * 17 16 14 20 20 C 1.50696 * 109.47001 * 60.00016 * 9 7 2 21 21 C 1.34512 * 125.79090 * 265.02000 * 20 9 7 22 22 C 1.41379 * 106.84332 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.84086 * 0.02562 * 22 21 20 24 24 O 1.34301 * 125.79037 * 85.02596 * 20 9 7 25 25 H 0.97001 * 120.00003 * 0.02562 * 1 2 3 26 26 H 1.09005 * 117.49541 * 214.97967 * 16 14 12 27 27 H 1.09000 * 117.49681 * 359.97438 * 16 14 12 28 28 H 1.08007 * 126.58064 * 359.97438 * 21 20 9 29 29 H 1.07996 * 126.58354 * 180.02562 * 22 21 20 30 30 H 1.07998 * 125.79383 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0018 12 6 1.8029 -4.7389 0.5999 13 8 0.7080 -4.8086 1.1061 14 6 2.7287 -5.9272 0.6400 15 1 3.3687 -6.0544 -0.2331 16 6 3.3004 -6.3316 2.0004 17 6 2.2240 -7.1927 1.3364 18 9 0.9384 -7.1580 1.8870 19 9 2.6196 -8.4244 0.8039 20 6 0.3851 -2.5792 -1.2302 21 6 -0.9134 -2.2354 -1.3023 22 6 -1.3257 -2.4693 -2.6342 23 6 -0.2548 -2.9425 -3.2964 24 8 0.7789 -3.0061 -2.4412 25 1 -0.4850 0.8401 -0.0004 26 1 4.3168 -6.7249 2.0224 27 1 3.0071 -5.7379 2.8662 28 1 -1.5240 -1.8546 -0.4969 29 1 -2.3114 -2.3003 -3.0419 30 1 -0.2300 -3.2232 -4.3389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547300.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:36 Heat of formation + Delta-G solvation = -130.229217 kcal Electronic energy + Delta-G solvation = -20912.819189 eV Core-core repulsion = 17119.539929 eV Total energy + Delta-G solvation = -3793.279261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.67672 -47.31097 -41.38395 -39.78815 -36.51347 -35.26365 -33.36616 -31.71951 -29.74840 -26.84447 -25.18494 -22.92327 -22.53956 -20.72038 -20.23091 -19.37321 -18.25575 -17.18379 -16.93234 -16.50674 -16.18596 -15.83379 -15.35081 -15.11447 -14.71552 -14.44343 -13.95457 -13.72271 -13.44022 -13.26977 -12.91804 -12.47344 -12.16608 -11.80539 -11.62163 -11.35419 -11.26300 -11.14854 -11.02036 -10.43433 -10.26558 -10.18711 -9.84227 -9.50063 -8.87576 -8.67806 -7.28545 -6.26308 -4.46311 2.31332 2.73321 2.87950 3.03687 3.18464 3.24430 3.27681 3.44657 3.90284 4.10822 4.16915 4.19560 4.46502 4.59439 5.00760 5.17847 5.35480 5.57604 5.60635 5.81353 6.04781 6.33303 6.60773 6.95350 7.10376 7.20397 7.29772 7.62864 7.67888 7.77288 8.26205 8.40806 8.69153 9.20921 10.71013 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.006111 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.207090 B = 4581.000838 C = 5381.200354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.300 3.700 10 H 0.080 0.920 11 O -0.339 6.339 12 C 0.481 3.519 13 O -0.494 6.494 14 C -0.165 4.165 15 H 0.157 0.843 16 C -0.144 4.144 17 C 0.225 3.775 18 F -0.138 7.138 19 F -0.157 7.157 20 C 0.016 3.984 21 C -0.173 4.173 22 C -0.219 4.219 23 C -0.088 4.088 24 O -0.179 6.179 25 H 0.270 0.730 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 -9.460 0.538 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.097 0.903 9 C 0.247 3.753 10 H 0.097 0.903 11 O -0.255 6.255 12 C 0.322 3.678 13 O -0.382 6.382 14 C -0.186 4.186 15 H 0.175 0.825 16 C -0.182 4.182 17 C 0.188 3.812 18 F -0.118 7.118 19 F -0.137 7.137 20 C -0.034 4.034 21 C -0.192 4.192 22 C -0.238 4.238 23 C -0.155 4.155 24 O -0.076 6.076 25 H 0.080 0.920 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.164 0.836 29 H 0.149 0.851 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.380 -9.431 0.623 10.417 hybrid contribution -0.231 0.991 -0.418 1.100 sum 4.149 -8.440 0.205 9.407 Atomic orbital electron populations 1.70026 1.05965 1.27765 1.46369 1.24948 0.95157 0.99603 0.93935 0.86201 0.79633 0.81490 0.78461 1.20272 1.20764 1.19342 1.20888 0.94195 0.87421 1.54367 0.90299 1.19268 0.85555 0.81434 0.89024 0.90252 1.86528 1.48418 1.21540 1.69015 1.21871 0.85605 0.84268 0.76105 1.90714 1.21636 1.82951 1.42932 1.23137 1.02065 0.92008 1.01350 0.82513 1.24332 0.99168 0.98806 0.95880 1.19595 0.82074 0.79557 0.99934 1.93136 1.37417 1.96230 1.85034 1.93041 1.90064 1.43961 1.86642 1.23535 0.94452 1.00181 0.85270 1.21302 0.95093 1.05735 0.97073 1.21729 0.99363 1.07113 0.95637 1.23614 0.86694 1.09505 0.95722 1.83979 1.37601 1.66856 1.19132 0.92048 0.84601 0.85095 0.83589 0.85085 0.79838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.50 10.48 55.43 0.58 -22.92 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 3 Si 0.92 20.47 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.53 -14.34 8.89 -34.44 -0.31 -14.65 16 8 H 0.08 2.08 7.81 -52.49 -0.41 1.67 16 9 C 0.30 7.80 2.41 -29.04 -0.07 7.73 16 10 H 0.08 2.20 7.15 -51.93 -0.37 1.83 16 11 O -0.34 -7.78 9.84 -42.03 -0.41 -8.20 16 12 C 0.48 9.68 7.71 36.01 0.28 9.95 16 13 O -0.49 -11.34 14.37 -18.75 -0.27 -11.61 16 14 C -0.17 -2.35 6.29 -91.77 -0.58 -2.93 16 15 H 0.16 1.82 8.14 -51.93 -0.42 1.39 16 16 C -0.14 -1.53 10.20 -26.73 -0.27 -1.81 16 17 C 0.23 3.10 5.19 -26.73 -0.14 2.96 16 18 F -0.14 -2.34 15.72 2.25 0.04 -2.30 16 19 F -0.16 -2.03 17.60 2.25 0.04 -1.99 16 20 C 0.02 0.42 5.67 -35.63 -0.20 0.22 16 21 C -0.17 -4.30 9.04 -39.70 -0.36 -4.66 16 22 C -0.22 -4.69 10.91 -39.70 -0.43 -5.13 16 23 C -0.09 -1.81 12.09 29.42 0.36 -1.45 16 24 O -0.18 -4.36 10.63 2.08 0.02 -4.34 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.14 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.13 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.15 3.74 7.49 -52.48 -0.39 3.34 16 29 H 0.13 2.38 8.06 -52.49 -0.42 1.95 16 30 H 0.18 2.85 8.06 -52.49 -0.42 2.42 16 LS Contribution 284.49 15.07 4.29 4.29 Total: -1.00 -31.04 284.49 -4.98 -36.02 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -2.42 Total: 3.62 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.82 Total: -8.01 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.58 Total: -22.92 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.66 Total: -24.15 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.08 Total: -4.30 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.04 -4.98 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547300.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.208 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds