Wall clock time and date at job start Mon Mar 30 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00006 * 2 1 4 4 H 1.48496 * 109.47217 * 269.99452 * 3 2 1 5 5 H 1.48504 * 109.47417 * 29.99650 * 3 2 1 6 6 H 1.48504 * 109.47294 * 149.99429 * 3 2 1 7 7 C 1.37882 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99944 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46911 * 299.99690 * 9 7 2 11 11 O 1.45202 * 109.46899 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00248 * 150.00272 * 11 9 7 13 13 O 1.20825 * 119.99842 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00042 * 179.97438 * 12 11 9 15 15 H 1.08999 * 115.55321 * 325.67474 * 14 12 11 16 16 C 1.53006 * 117.49407 * 111.37854 * 14 12 11 17 17 C 1.52997 * 59.99880 * 107.48901 * 16 14 12 18 18 F 1.39899 * 117.49810 * 252.50807 * 17 16 14 19 19 F 1.39900 * 117.49989 * 107.48799 * 17 16 14 20 20 C 1.50696 * 109.47001 * 60.00016 * 9 7 2 21 21 C 1.34512 * 125.79090 * 265.02000 * 20 9 7 22 22 C 1.41379 * 106.84332 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.84086 * 0.02562 * 22 21 20 24 24 O 1.34301 * 125.79037 * 85.02596 * 20 9 7 25 25 H 0.97001 * 120.00003 * 0.02562 * 1 2 3 26 26 H 1.09005 * 117.49541 * 214.97967 * 16 14 12 27 27 H 1.09000 * 117.49681 * 359.97438 * 16 14 12 28 28 H 1.08007 * 126.58064 * 359.97438 * 21 20 9 29 29 H 1.07996 * 126.58354 * 180.02562 * 22 21 20 30 30 H 1.07998 * 125.79383 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0018 12 6 1.8029 -4.7389 0.5999 13 8 0.7080 -4.8086 1.1061 14 6 2.7287 -5.9272 0.6400 15 1 3.3687 -6.0544 -0.2331 16 6 3.3004 -6.3316 2.0004 17 6 2.2240 -7.1927 1.3364 18 9 0.9384 -7.1580 1.8870 19 9 2.6196 -8.4244 0.8039 20 6 0.3851 -2.5792 -1.2302 21 6 -0.9134 -2.2354 -1.3023 22 6 -1.3257 -2.4693 -2.6342 23 6 -0.2548 -2.9425 -3.2964 24 8 0.7789 -3.0061 -2.4412 25 1 -0.4850 0.8401 -0.0004 26 1 4.3168 -6.7249 2.0224 27 1 3.0071 -5.7379 2.8662 28 1 -1.5240 -1.8546 -0.4969 29 1 -2.3114 -2.3003 -3.0419 30 1 -0.2300 -3.2232 -4.3389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547300.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:36 Heat of formation + Delta-G solvation = -148.397267 kcal Electronic energy + Delta-G solvation = -20913.607015 eV Core-core repulsion = 17119.539929 eV Total energy + Delta-G solvation = -3794.067086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.77721 -48.44835 -43.20230 -41.43584 -38.03527 -36.65827 -35.33571 -33.54806 -31.63804 -28.70305 -26.68762 -24.63258 -23.63142 -22.45174 -21.86147 -21.10142 -19.60325 -18.90033 -18.56899 -17.97061 -17.68937 -17.14903 -16.95555 -16.84496 -16.44614 -16.11989 -15.09238 -15.00038 -14.79409 -14.63630 -14.50617 -14.01606 -13.68218 -13.52033 -13.44066 -13.15451 -13.01975 -12.84325 -12.39473 -12.22912 -12.07741 -11.57732 -11.42953 -11.18953 -10.83293 -10.52815 -9.13564 -8.24576 -6.54981 0.88696 1.06348 1.38316 1.42722 1.48737 1.57668 1.90844 2.04368 2.15962 2.36164 2.38936 2.99841 3.07316 3.37021 3.46975 3.81640 4.19082 4.38558 4.41869 4.54402 4.55376 4.63516 4.73044 5.13446 5.29662 5.38131 5.45110 5.63792 5.78158 5.91011 6.46343 6.51581 6.80052 7.16824 8.71225 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.006111 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.207090 B = 4581.000838 C = 5381.200354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.024 3.976 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.303 3.697 10 H 0.044 0.956 11 O -0.346 6.346 12 C 0.473 3.527 13 O -0.532 6.532 14 C -0.178 4.178 15 H 0.187 0.813 16 C -0.101 4.101 17 C 0.210 3.790 18 F -0.164 7.164 19 F -0.150 7.150 20 C -0.014 4.014 21 C -0.189 4.189 22 C -0.231 4.231 23 C -0.069 4.069 24 O -0.195 6.195 25 H 0.271 0.729 26 H 0.187 0.813 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.165 0.835 30 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 -9.807 -0.541 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.249 3.751 10 H 0.062 0.938 11 O -0.262 6.262 12 C 0.316 3.684 13 O -0.422 6.422 14 C -0.198 4.198 15 H 0.204 0.796 16 C -0.138 4.138 17 C 0.174 3.826 18 F -0.144 7.144 19 F -0.131 7.131 20 C -0.064 4.064 21 C -0.209 4.209 22 C -0.250 4.250 23 C -0.136 4.136 24 O -0.092 6.092 25 H 0.080 0.920 26 H 0.205 0.795 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.183 0.817 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.071 -9.803 -0.448 11.539 hybrid contribution -0.825 1.004 -0.119 1.304 sum 5.246 -8.799 -0.567 10.260 Atomic orbital electron populations 1.70165 1.07295 1.28539 1.46565 1.25847 0.96036 1.02866 0.93196 0.85185 0.78720 0.77062 0.78510 1.20028 1.20069 1.18218 1.21163 0.94324 0.88466 1.55290 0.90354 1.18836 0.85554 0.82444 0.88257 0.93802 1.86507 1.47832 1.22103 1.69775 1.23004 0.86178 0.84661 0.74532 1.90691 1.23656 1.83461 1.44388 1.23291 1.02163 0.89299 1.05002 0.79560 1.24628 1.00363 0.95506 0.93303 1.19902 0.82144 0.79612 1.00992 1.93081 1.39577 1.96356 1.85419 1.93052 1.89807 1.43478 1.86739 1.23395 0.94854 1.02172 0.85974 1.21374 0.95057 1.05931 0.98518 1.22081 1.01435 1.07430 0.94024 1.24693 0.85115 1.06635 0.97128 1.83953 1.39070 1.67158 1.19041 0.91969 0.79539 0.84982 0.85576 0.81729 0.74316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.76 10.48 21.45 0.22 -49.54 16 2 C 0.02 1.28 5.30 84.66 0.45 1.73 16 3 Si 0.98 42.04 29.54 68.60 2.03 44.06 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.56 -30.85 8.89 25.60 0.23 -30.62 16 8 H 0.08 4.21 7.81 -2.91 -0.02 4.19 16 9 C 0.30 16.49 2.41 29.10 0.07 16.56 16 10 H 0.04 2.64 7.15 -2.39 -0.02 2.62 16 11 O -0.35 -16.40 9.84 -48.73 -0.48 -16.87 16 12 C 0.47 19.51 7.71 71.24 0.55 20.06 16 13 O -0.53 -25.69 14.37 21.97 0.32 -25.37 16 14 C -0.18 -4.80 6.29 -11.54 -0.07 -4.87 16 15 H 0.19 3.83 8.14 -2.39 -0.02 3.81 16 16 C -0.10 -1.84 10.20 30.60 0.31 -1.53 16 17 C 0.21 5.49 5.19 30.59 0.16 5.65 16 18 F -0.16 -5.63 15.72 44.97 0.71 -4.92 16 19 F -0.15 -3.59 17.60 44.97 0.79 -2.80 16 20 C -0.01 -0.72 5.67 24.83 0.14 -0.58 16 21 C -0.19 -9.70 9.04 22.19 0.20 -9.50 16 22 C -0.23 -9.62 10.91 22.19 0.24 -9.38 16 23 C -0.07 -2.69 12.09 66.97 0.81 -1.88 16 24 O -0.19 -9.44 10.63 1.00 0.01 -9.43 16 25 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.19 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.13 6.85 7.49 -2.91 -0.02 6.83 16 29 H 0.17 5.58 8.06 -2.91 -0.02 5.56 16 30 H 0.24 6.27 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -71.75 284.49 7.87 -63.88 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.18 Total: 15.36 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 3.09 Total: -14.38 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.22 Total: -49.54 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.15 Total: -51.67 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 1.50 Total: -7.72 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -71.75 7.87 -63.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547300.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.516 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds