Wall clock time and date at job start Mon Mar 30 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47144 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47401 * 59.99751 * 9 7 2 12 12 C 1.34239 * 116.99547 * 90.00042 * 11 9 7 13 13 O 1.20825 * 120.00135 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99900 * 180.02562 * 12 11 9 15 15 H 1.08999 * 115.54931 * 34.40974 * 14 12 11 16 16 C 1.53003 * 117.49580 * 248.74559 * 14 12 11 17 17 C 1.52994 * 117.49864 * 180.08539 * 14 12 11 18 18 F 1.39903 * 117.49818 * 214.97722 * 17 14 12 19 19 F 1.39901 * 117.50073 * 359.97353 * 17 14 12 20 20 C 1.50704 * 109.47313 * 300.00258 * 9 7 2 21 21 C 1.34517 * 125.78699 * 264.99866 * 20 9 7 22 22 C 1.41379 * 106.83933 * 179.97438 * 21 20 9 23 23 C 1.34511 * 106.84474 * 0.02562 * 22 21 20 24 24 O 1.34296 * 125.79125 * 84.69129 * 20 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08994 * 117.49829 * 0.02562 * 16 14 12 27 27 H 1.08995 * 117.49818 * 145.02118 * 16 14 12 28 28 H 1.08003 * 126.58174 * 359.97267 * 21 20 9 29 29 H 1.07999 * 126.57814 * 180.02562 * 22 21 20 30 30 H 1.07996 * 125.79310 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3277 -0.0005 11 8 0.4158 -2.5758 -1.1857 12 6 0.9620 -3.1258 -2.2817 13 8 2.1002 -3.5302 -2.2514 14 6 0.1557 -3.2389 -3.5497 15 1 -0.5458 -2.4255 -3.7349 16 6 -0.2531 -4.6416 -4.0041 17 6 0.8340 -3.8770 -4.7636 18 9 0.5060 -3.3720 -6.0264 19 9 2.1555 -4.3103 -4.6117 20 6 0.3850 -2.5792 1.2302 21 6 0.7174 -3.1775 2.3883 22 6 -0.3808 -3.0139 3.2636 23 6 -1.3187 -2.3261 2.5880 24 8 -0.8470 -2.0605 1.3588 25 1 -0.4850 0.8401 0.0004 26 1 0.0607 -5.4824 -3.3857 27 1 -1.2234 -4.7508 -4.4886 28 1 1.6450 -3.6853 2.6074 29 1 -0.4528 -3.3725 4.2798 30 1 -2.2852 -2.0332 2.9705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:39 Heat of formation + Delta-G solvation = -126.790473 kcal Electronic energy + Delta-G solvation = -21007.703225 eV Core-core repulsion = 17214.573079 eV Total energy + Delta-G solvation = -3793.130145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.069 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.51915 -47.15556 -41.36030 -39.44154 -36.25148 -34.97024 -33.00243 -31.87889 -29.93180 -26.68113 -25.01603 -22.94329 -22.44028 -20.73410 -19.85752 -19.48852 -18.08321 -16.99977 -16.82708 -16.41097 -15.94765 -15.68693 -15.20622 -14.88766 -14.47739 -14.44008 -13.80914 -13.58801 -13.39768 -13.21936 -12.78270 -12.43645 -11.93088 -11.80400 -11.62330 -11.39892 -11.27471 -11.02750 -10.94114 -10.45489 -10.05145 -9.89335 -9.63329 -9.16786 -8.87231 -8.80792 -7.39125 -6.28233 -4.50599 2.59669 2.84113 2.99114 3.19218 3.23583 3.27167 3.30847 3.57953 3.73089 4.20504 4.22532 4.35150 4.62630 4.74967 5.04815 5.31947 5.51451 5.71643 5.75425 5.86237 5.93712 6.28719 6.39319 6.76354 6.84470 7.15164 7.42494 7.55696 7.64679 7.74247 8.35823 8.50453 8.83515 9.23337 10.70663 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.006908 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.691701 B = 4052.461860 C = 4992.408274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.080 3.920 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.279 3.721 10 H 0.073 0.927 11 O -0.326 6.326 12 C 0.486 3.514 13 O -0.510 6.510 14 C -0.161 4.161 15 H 0.155 0.845 16 C -0.148 4.148 17 C 0.223 3.777 18 F -0.159 7.159 19 F -0.139 7.139 20 C 0.080 3.920 21 C -0.263 4.263 22 C -0.221 4.221 23 C -0.081 4.081 24 O -0.117 6.117 25 H 0.269 0.731 26 H 0.127 0.873 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 -6.258 -3.536 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.131 4.131 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.093 0.907 9 C 0.227 3.773 10 H 0.091 0.909 11 O -0.241 6.241 12 C 0.328 3.672 13 O -0.400 6.400 14 C -0.182 4.182 15 H 0.173 0.827 16 C -0.186 4.186 17 C 0.186 3.814 18 F -0.139 7.139 19 F -0.120 7.120 20 C 0.027 3.973 21 C -0.282 4.282 22 C -0.240 4.240 23 C -0.150 4.150 24 O -0.009 6.009 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.373 -6.081 -3.724 8.365 hybrid contribution 0.663 1.102 0.283 1.317 sum -3.710 -4.979 -3.441 7.099 Atomic orbital electron populations 1.70036 1.05762 1.27577 1.42458 1.25178 0.95040 0.99883 0.92981 0.86535 0.79823 0.81945 0.79220 1.20789 1.19677 1.19651 1.21240 0.93533 0.89229 1.54481 0.90657 1.18849 0.84708 0.98399 0.75324 0.90911 1.86734 1.47538 1.69801 1.20060 1.21621 0.85378 0.75088 0.85140 1.90640 1.18456 1.46439 1.84455 1.23197 1.02415 1.00621 0.91918 0.82740 1.24303 0.99178 0.95082 1.00035 1.19629 0.80195 1.02071 0.79546 1.93029 1.91961 1.87858 1.41080 1.93118 1.34327 1.89381 1.95138 1.22758 0.83839 0.93178 0.97560 1.21170 1.01410 1.11086 0.94563 1.21496 0.95283 1.06670 1.00554 1.23799 1.00431 1.04794 0.86008 1.84414 1.27848 1.58756 1.29840 0.92113 0.85473 0.84930 0.84878 0.85115 0.79978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.30 10.62 55.43 0.59 -21.71 16 2 C 0.08 2.14 5.24 -17.82 -0.09 2.04 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.55 -14.90 8.91 -34.44 -0.31 -15.21 16 8 H 0.08 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.28 7.08 2.57 -29.04 -0.07 7.00 16 10 H 0.07 1.80 7.16 -51.93 -0.37 1.43 16 11 O -0.33 -7.99 9.25 -42.04 -0.39 -8.38 16 12 C 0.49 10.55 7.71 36.00 0.28 10.82 16 13 O -0.51 -12.15 14.37 -18.75 -0.27 -12.42 16 14 C -0.16 -2.63 6.28 -91.77 -0.58 -3.20 16 15 H 0.15 2.26 8.14 -51.93 -0.42 1.84 16 16 C -0.15 -1.78 10.21 -26.69 -0.27 -2.06 16 17 C 0.22 3.41 5.19 -26.70 -0.14 3.27 16 18 F -0.16 -2.32 17.60 2.25 0.04 -2.28 16 19 F -0.14 -2.52 15.72 2.25 0.04 -2.49 16 20 C 0.08 1.95 5.59 -35.62 -0.20 1.75 16 21 C -0.26 -5.71 10.81 -39.70 -0.43 -6.14 16 22 C -0.22 -4.26 10.91 -39.70 -0.43 -4.69 16 23 C -0.08 -1.61 12.09 29.41 0.36 -1.25 16 24 O -0.12 -2.83 8.87 2.18 0.02 -2.81 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.13 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.13 2.62 8.06 -52.48 -0.42 2.20 16 29 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.18 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -30.92 284.67 -5.05 -35.97 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -2.45 Total: 1.86 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.89 Total: -7.66 kcal Atomic # 7 Polarization: -22.30 SS G_CDS: 0.59 Total: -21.71 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.64 Total: -23.60 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.08 Total: -4.77 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.92 -5.05 -35.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.825 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds