Wall clock time and date at job start Mon Mar 30 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47144 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47401 * 59.99751 * 9 7 2 12 12 C 1.34239 * 116.99547 * 90.00042 * 11 9 7 13 13 O 1.20825 * 120.00135 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99900 * 180.02562 * 12 11 9 15 15 H 1.08999 * 115.54931 * 34.40974 * 14 12 11 16 16 C 1.53003 * 117.49580 * 248.74559 * 14 12 11 17 17 C 1.52994 * 117.49864 * 180.08539 * 14 12 11 18 18 F 1.39903 * 117.49818 * 214.97722 * 17 14 12 19 19 F 1.39901 * 117.50073 * 359.97353 * 17 14 12 20 20 C 1.50704 * 109.47313 * 300.00258 * 9 7 2 21 21 C 1.34517 * 125.78699 * 264.99866 * 20 9 7 22 22 C 1.41379 * 106.83933 * 179.97438 * 21 20 9 23 23 C 1.34511 * 106.84474 * 0.02562 * 22 21 20 24 24 O 1.34296 * 125.79125 * 84.69129 * 20 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08994 * 117.49829 * 0.02562 * 16 14 12 27 27 H 1.08995 * 117.49818 * 145.02118 * 16 14 12 28 28 H 1.08003 * 126.58174 * 359.97267 * 21 20 9 29 29 H 1.07999 * 126.57814 * 180.02562 * 22 21 20 30 30 H 1.07996 * 125.79310 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3277 -0.0005 11 8 0.4158 -2.5758 -1.1857 12 6 0.9620 -3.1258 -2.2817 13 8 2.1002 -3.5302 -2.2514 14 6 0.1557 -3.2389 -3.5497 15 1 -0.5458 -2.4255 -3.7349 16 6 -0.2531 -4.6416 -4.0041 17 6 0.8340 -3.8770 -4.7636 18 9 0.5060 -3.3720 -6.0264 19 9 2.1555 -4.3103 -4.6117 20 6 0.3850 -2.5792 1.2302 21 6 0.7174 -3.1775 2.3883 22 6 -0.3808 -3.0139 3.2636 23 6 -1.3187 -2.3261 2.5880 24 8 -0.8470 -2.0605 1.3588 25 1 -0.4850 0.8401 0.0004 26 1 0.0607 -5.4824 -3.3857 27 1 -1.2234 -4.7508 -4.4886 28 1 1.6450 -3.6853 2.6074 29 1 -0.4528 -3.3725 4.2798 30 1 -2.2852 -2.0332 2.9705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:39 Heat of formation + Delta-G solvation = -144.380425 kcal Electronic energy + Delta-G solvation = -21008.465982 eV Core-core repulsion = 17214.573079 eV Total energy + Delta-G solvation = -3793.892903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.069 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.74588 -48.41569 -43.04029 -41.16739 -37.82580 -36.50376 -34.96382 -33.56331 -31.71875 -28.47499 -26.59944 -24.65372 -23.61098 -22.36541 -21.42017 -21.19979 -19.52137 -18.79164 -18.41104 -17.88063 -17.49989 -17.04919 -17.00238 -16.55574 -16.25699 -16.07249 -15.09594 -15.05755 -14.70438 -14.63050 -14.43199 -13.85215 -13.56403 -13.38269 -13.29886 -13.08327 -13.02778 -12.84905 -12.34368 -12.25255 -11.87348 -11.44378 -11.18011 -11.04637 -10.80927 -10.48943 -9.08280 -8.25771 -6.56473 1.08737 1.17656 1.36093 1.38528 1.45087 1.69431 1.92496 2.01964 2.26713 2.31549 2.59124 3.02784 3.13420 3.44810 3.52580 3.93937 4.31382 4.40157 4.43784 4.46870 4.55158 4.65982 4.74653 5.14130 5.23481 5.42614 5.54263 5.76096 5.84093 5.92921 6.47361 6.70027 7.02203 7.21556 8.71565 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.006908 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.691701 B = 4052.461860 C = 4992.408274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.044 3.956 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.580 4.580 8 H 0.060 0.940 9 C 0.279 3.721 10 H 0.061 0.939 11 O -0.340 6.340 12 C 0.476 3.524 13 O -0.541 6.541 14 C -0.183 4.183 15 H 0.171 0.829 16 C -0.099 4.099 17 C 0.209 3.791 18 F -0.154 7.154 19 F -0.162 7.162 20 C 0.041 3.959 21 C -0.264 4.264 22 C -0.219 4.219 23 C -0.080 4.080 24 O -0.145 6.145 25 H 0.270 0.730 26 H 0.135 0.865 27 H 0.182 0.818 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -6.532 -3.222 9.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.166 4.166 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.616 4.616 8 H 0.078 0.922 9 C 0.226 3.774 10 H 0.079 0.921 11 O -0.255 6.255 12 C 0.320 3.680 13 O -0.433 6.433 14 C -0.203 4.203 15 H 0.188 0.812 16 C -0.136 4.136 17 C 0.172 3.828 18 F -0.134 7.134 19 F -0.142 7.142 20 C -0.012 4.012 21 C -0.283 4.283 22 C -0.238 4.238 23 C -0.148 4.148 24 O -0.038 6.038 25 H 0.080 0.920 26 H 0.153 0.847 27 H 0.199 0.801 28 H 0.163 0.837 29 H 0.187 0.813 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.085 -6.365 -3.416 9.445 hybrid contribution 1.172 1.107 0.204 1.625 sum -4.913 -5.259 -3.212 7.881 Atomic orbital electron populations 1.70131 1.06509 1.28109 1.42774 1.25780 0.95876 1.02329 0.92568 0.85680 0.78825 0.78725 0.78940 1.19516 1.19401 1.19968 1.21390 0.93148 0.90905 1.56136 0.92181 1.18663 0.85282 0.97143 0.76275 0.92147 1.86696 1.47471 1.70553 1.20751 1.22610 0.85595 0.73794 0.85956 1.90611 1.19993 1.47671 1.85012 1.23260 1.03184 1.04426 0.89442 0.81179 1.24588 0.99721 0.92214 0.97032 1.19919 0.80199 1.03298 0.79340 1.93038 1.91769 1.88038 1.40590 1.93070 1.36291 1.89589 1.95273 1.22645 0.84777 0.95813 0.97960 1.21557 1.02519 1.09966 0.94277 1.21898 0.93848 1.06134 1.01876 1.24732 1.01977 1.03653 0.84459 1.84349 1.27894 1.59478 1.32058 0.92035 0.84656 0.80062 0.83744 0.81262 0.75795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.95 10.62 21.45 0.23 -45.73 16 2 C 0.04 2.35 5.24 84.66 0.44 2.80 16 3 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.58 -32.67 8.91 25.60 0.23 -32.44 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.28 14.70 2.57 29.10 0.07 14.77 16 10 H 0.06 3.19 7.16 -2.38 -0.02 3.17 16 11 O -0.34 -17.13 9.25 -48.87 -0.45 -17.58 16 12 C 0.48 21.19 7.71 71.23 0.55 21.73 16 13 O -0.54 -26.84 14.37 21.97 0.32 -26.53 16 14 C -0.18 -5.79 6.28 -11.54 -0.07 -5.86 16 15 H 0.17 4.77 8.14 -2.39 -0.02 4.75 16 16 C -0.10 -2.07 10.21 30.62 0.31 -1.76 16 17 C 0.21 6.14 5.19 30.62 0.16 6.30 16 18 F -0.15 -4.24 17.60 44.97 0.79 -3.44 16 19 F -0.16 -5.89 15.72 44.97 0.71 -5.19 16 20 C 0.04 2.01 5.59 24.83 0.14 2.15 16 21 C -0.26 -11.33 10.81 22.19 0.24 -11.09 16 22 C -0.22 -7.90 10.91 22.19 0.24 -7.65 16 23 C -0.08 -2.99 12.09 66.97 0.81 -2.18 16 24 O -0.14 -6.97 8.87 0.86 0.01 -6.96 16 25 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.18 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.14 5.66 8.06 -2.91 -0.02 5.64 16 29 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.23 6.08 8.06 -2.91 -0.02 6.06 16 Total: -1.00 -69.70 284.67 7.93 -61.77 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.18 Total: 12.03 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 3.13 Total: -13.23 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.23 Total: -45.73 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.13 Total: -51.07 kcal Atomic # 9 Polarization: -10.13 SS G_CDS: 1.50 Total: -8.63 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -69.70 7.93 -61.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.606 kcal (2) G-P(sol) polarization free energy of solvation -69.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds