Wall clock time and date at job start Mon Mar 30 2020 01:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46865 * 259.13395 * 3 2 1 5 5 C 1.36787 * 120.00105 * 129.05329 * 4 3 2 6 6 H 1.07993 * 120.00630 * 119.72884 * 5 4 3 7 7 C 1.39106 * 119.99409 * 300.00532 * 5 4 3 8 8 N 1.31323 * 120.00495 * 40.12313 * 7 5 4 9 9 Si 1.86806 * 119.99639 * 220.12286 * 7 5 4 10 10 H 1.48496 * 109.46898 * 90.00235 * 9 7 5 11 11 H 1.48510 * 109.46925 * 210.00023 * 9 7 5 12 12 H 1.48491 * 109.47171 * 329.99634 * 9 7 5 13 13 C 1.34777 * 120.00087 * 309.04422 * 4 3 2 14 14 O 1.21609 * 120.00144 * 185.61664 * 13 4 3 15 15 C 1.47605 * 119.99805 * 5.62340 * 13 4 3 16 16 C 1.39803 * 120.02072 * 338.41861 * 15 13 4 17 17 C 1.37584 * 120.02428 * 179.72004 * 16 15 13 18 18 C 1.39788 * 120.07638 * 0.55724 * 17 16 15 19 19 C 1.43201 * 119.98168 * 179.69586 * 18 17 16 20 20 N 6.24948 * 55.30214 * 174.17408 * 2 1 3 21 21 C 1.39596 * 120.04434 * 359.72080 * 18 17 16 22 22 C 1.38042 * 119.96741 * 0.02562 * 21 18 17 23 23 F 1.35098 * 120.03552 * 179.97438 * 22 21 18 24 24 H 4.40642 * 5.51418 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.47287 * 139.13620 * 3 2 1 26 26 H 1.08998 * 109.47621 * 19.13257 * 3 2 1 27 27 H 0.97000 * 120.00313 * 180.02562 * 8 7 5 28 28 H 1.07995 * 119.98249 * 359.97438 * 16 15 13 29 29 H 1.08002 * 119.95901 * 180.25314 * 17 16 15 30 30 H 1.08001 * 120.01354 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2613 1.3565 5 6 4.0662 -0.5671 1.9189 6 1 5.0245 -0.1736 2.2239 7 6 3.7816 -1.9175 2.0928 8 7 3.1342 -2.5776 1.1603 9 14 4.3205 -2.7922 3.6530 10 1 3.2470 -2.6895 4.6740 11 1 4.5831 -4.2228 3.3530 12 1 5.5597 -2.1598 4.1722 13 6 2.6651 1.3173 2.0503 14 8 3.1428 1.5936 3.1339 15 6 1.5715 2.1383 1.4948 16 6 1.3229 2.1338 0.1190 17 6 0.2998 2.8946 -0.3982 18 6 -0.4851 3.6821 0.4491 19 6 -1.5452 4.4782 -0.0921 20 7 -2.3834 5.1116 -0.5216 21 6 -0.2359 3.6933 1.8226 22 6 0.7868 2.9266 2.3441 23 9 1.0295 2.9369 3.6731 24 1 -1.0501 0.0002 -0.0001 25 1 3.0090 0.7780 -0.6724 26 1 3.0099 -0.9700 -0.3368 27 1 2.9354 -3.5193 1.2817 28 1 1.9315 1.5298 -0.5374 29 1 0.1061 2.8872 -1.4607 30 1 -0.8429 4.3015 2.4769 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459387883.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:24 Heat of formation + Delta-G solvation = 82.279398 kcal Electronic energy + Delta-G solvation = -20127.385610 eV Core-core repulsion = 16806.383390 eV Total energy + Delta-G solvation = -3321.002220 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.070 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.87032 -41.60948 -39.49479 -37.64170 -37.15752 -35.09477 -33.30193 -32.19206 -31.34136 -28.54418 -27.28117 -25.28341 -23.81770 -21.66264 -20.44741 -19.44204 -19.01989 -17.92500 -17.54412 -17.17374 -16.79978 -16.72345 -16.10194 -15.98431 -15.49444 -15.40972 -14.98242 -14.59443 -14.36077 -14.27754 -13.86027 -13.81801 -13.60328 -13.21498 -13.10481 -12.93865 -12.63190 -12.15918 -11.72622 -11.42841 -11.20217 -10.62616 -10.51105 -9.87329 -9.48734 -9.37280 -8.62398 -6.18293 -0.65313 0.12783 1.32065 1.42130 1.45986 1.53712 1.55686 1.84807 2.10392 2.24224 2.33453 2.58785 2.67110 2.84194 3.12130 3.31258 3.59131 3.68674 3.94974 3.98004 4.15510 4.43264 4.66410 4.83693 4.97822 5.05442 5.10931 5.12450 5.28142 5.46699 5.64577 6.28367 6.35304 6.55750 6.80746 7.09751 7.22830 7.96012 8.41884 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.028052 B = 0.006191 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.895494 B = 4521.454375 C = 5126.187907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.192 4.192 3 C 0.185 3.815 4 N -0.441 5.441 5 C -0.391 4.391 6 H 0.065 0.935 7 C 0.061 3.939 8 N -0.828 5.828 9 Si 0.935 3.065 10 H -0.288 1.288 11 H -0.266 1.266 12 H -0.271 1.271 13 C 0.496 3.504 14 O -0.603 6.603 15 C -0.154 4.154 16 C -0.061 4.061 17 C -0.079 4.079 18 C 0.025 3.975 19 C 0.287 3.713 20 N -0.443 5.443 21 C -0.117 4.117 22 C 0.126 3.874 23 F -0.139 7.139 24 H 0.244 0.756 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.281 0.719 28 H 0.188 0.812 29 H 0.178 0.822 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 5.720 -7.118 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C 0.065 3.935 4 N -0.160 5.160 5 C -0.517 4.517 6 H 0.083 0.917 7 C -0.151 4.151 8 N -0.458 5.458 9 Si 0.759 3.241 10 H -0.214 1.214 11 H -0.190 1.190 12 H -0.196 1.196 13 C 0.286 3.714 14 O -0.488 6.488 15 C -0.159 4.159 16 C -0.079 4.079 17 C -0.099 4.099 18 C 0.021 3.979 19 C -0.028 4.028 20 N -0.118 5.118 21 C -0.138 4.138 22 C 0.105 3.895 23 F -0.117 7.117 24 H 0.260 0.740 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.092 0.908 28 H 0.204 0.796 29 H 0.196 0.804 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.300 6.593 -7.306 12.874 hybrid contribution 0.747 -0.992 1.661 2.074 sum -7.553 5.601 -5.646 10.968 Atomic orbital electron populations 1.25484 0.96313 1.02009 0.97131 1.22981 0.95072 0.98183 1.03059 1.19557 0.84146 1.04387 0.85413 1.43292 1.36399 1.24018 1.12322 1.18737 0.97976 0.90025 1.44915 0.91726 1.26006 0.94753 0.97122 0.97263 1.69954 1.36387 1.10297 1.29207 0.85893 0.78911 0.77654 0.81597 1.21419 1.19048 1.19592 1.18939 0.83753 0.83859 0.84814 1.90631 1.61996 1.72352 1.23784 1.20402 0.99019 1.00655 0.95834 1.22673 0.97613 0.94329 0.93235 1.21324 0.93048 0.94001 1.01544 1.15634 0.92979 0.97351 0.91902 1.25272 0.92331 0.92514 0.92669 1.81253 1.11202 1.10255 1.09091 1.20964 0.97334 1.00364 0.95112 1.17654 0.96526 0.97933 0.77356 1.91522 1.93759 1.95014 1.31432 0.73951 0.87556 0.86632 0.90808 0.79562 0.80427 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.18 16.73 74.32 1.24 -3.94 16 2 C -0.19 -6.29 8.86 31.12 0.28 -6.02 16 3 C 0.19 6.95 5.21 84.57 0.44 7.40 16 4 N -0.44 -21.15 2.76 -657.31 -1.82 -22.97 16 5 C -0.39 -21.02 8.40 84.13 0.71 -20.31 16 6 H 0.07 3.72 8.06 -2.91 -0.02 3.70 16 7 C 0.06 3.09 5.42 84.98 0.46 3.55 16 8 N -0.83 -40.34 11.59 21.69 0.25 -40.09 16 9 Si 0.94 41.73 29.69 68.60 2.04 43.77 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.50 24.08 7.28 86.72 0.63 24.71 16 14 O -0.60 -34.64 15.58 -4.06 -0.06 -34.70 16 15 C -0.15 -5.60 4.99 -20.01 -0.10 -5.70 16 16 C -0.06 -1.61 5.44 22.49 0.12 -1.49 16 17 C -0.08 -1.47 8.81 22.49 0.20 -1.27 16 18 C 0.03 0.50 5.73 -21.33 -0.12 0.38 16 19 C 0.29 5.82 15.31 88.34 1.35 7.17 16 20 N -0.44 -10.75 18.53 18.99 0.35 -10.39 16 21 C -0.12 -2.75 9.71 22.55 0.22 -2.53 16 22 C 0.13 4.24 7.24 22.64 0.16 4.40 16 23 F -0.14 -5.62 15.76 44.97 0.71 -4.91 16 24 H 0.24 4.58 7.80 -4.41 -0.03 4.55 16 25 H 0.11 3.12 6.22 -2.38 -0.01 3.10 16 26 H 0.12 4.84 6.13 -2.39 -0.01 4.82 16 27 H 0.28 12.83 8.31 -92.71 -0.77 12.06 16 28 H 0.19 4.72 2.74 -7.30 -0.02 4.70 16 29 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -67.75 279.75 8.26 -59.49 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.20 Total: 3.47 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 5.59 Total: 6.34 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.21 Total: -73.46 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.06 Total: -34.70 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.71 Total: -4.91 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.04 Total: 43.77 kcal Total: -67.75 8.26 -59.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459387883.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.770 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds