Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46795 * 2 1 4 4 N 1.28434 * 125.19260 * 90.02702 * 3 2 1 5 5 C 1.30844 * 111.00162 * 179.97438 * 4 3 2 6 6 C 1.39777 * 107.89506 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 127.33846 * 180.02562 * 6 5 4 8 8 C 1.36792 * 125.19402 * 269.99568 * 3 2 1 9 9 C 1.46867 * 126.91805 * 0.02562 * 8 3 2 10 10 O 1.21568 * 120.00439 * 179.97438 * 9 8 3 11 11 O 1.34836 * 119.99797 * 0.02562 * 9 8 3 12 12 C 1.45197 * 117.00367 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.47121 * 29.99211 * 12 11 9 14 14 C 1.53002 * 109.46878 * 269.99818 * 12 11 9 15 15 C 1.50691 * 109.47472 * 149.99572 * 12 11 9 16 16 H 1.07995 * 120.00349 * 359.97438 * 15 12 11 17 17 C 1.37884 * 120.00217 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99615 * 0.02562 * 17 15 12 19 19 Si 1.86794 * 120.00338 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47005 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47388 * 119.99737 * 19 17 15 22 22 H 1.48493 * 109.47261 * 240.00303 * 19 17 15 23 23 H 1.08995 * 109.47352 * 300.00144 * 1 2 3 24 24 H 1.09001 * 109.46864 * 60.00294 * 1 2 3 25 25 H 1.09001 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47352 * 239.99856 * 2 1 3 27 27 H 1.08996 * 109.46843 * 120.00199 * 2 1 3 28 28 H 1.08005 * 126.05313 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47458 * 59.99742 * 14 12 11 30 30 H 1.08997 * 109.47096 * 179.97438 * 14 12 11 31 31 H 1.08997 * 109.46975 * 299.99715 * 14 12 11 32 32 H 0.97001 * 119.99951 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2655 2.0789 1.0496 5 6 2.6886 3.2748 0.7288 6 6 2.7190 3.3598 -0.6660 7 17 3.2019 4.7222 -1.6276 8 6 2.2812 2.1245 -1.1179 9 6 2.1304 1.6993 -2.5155 10 8 2.4018 2.4680 -3.4174 11 8 1.6900 0.4567 -2.7984 12 6 1.5659 0.1048 -4.2016 13 1 2.3065 0.6558 -4.7813 14 6 0.1626 0.4631 -4.6950 15 6 1.7951 -1.3750 -4.3706 16 1 2.0129 -1.9895 -3.5097 17 6 1.7270 -1.9444 -5.6245 18 7 1.4623 -1.1960 -6.6731 19 14 2.0105 -3.7788 -5.8340 20 1 2.2876 -4.3912 -4.5098 21 1 0.7988 -4.4029 -6.4234 22 1 3.1698 -4.0008 -6.7349 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 2.9654 4.0576 1.4195 29 1 -0.0033 1.5335 -4.5727 30 1 0.0695 0.1994 -5.7484 31 1 -0.5780 -0.0878 -4.1153 32 1 1.4140 -1.5966 -7.5552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523925834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = -19.623469 kcal Electronic energy + Delta-G solvation = -19105.053798 eV Core-core repulsion = 15900.660194 eV Total energy + Delta-G solvation = -3204.393604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.58466 -39.35598 -36.50989 -35.83118 -34.45163 -33.33419 -30.95098 -29.79390 -29.49378 -25.43786 -24.43353 -23.62041 -21.53316 -21.04028 -19.64439 -17.87271 -16.78875 -16.25435 -16.10845 -15.45674 -14.87965 -14.67474 -14.63257 -14.17190 -13.58507 -13.08203 -12.83065 -12.36291 -12.12006 -12.07247 -11.72134 -11.61505 -11.38606 -11.23053 -11.11788 -10.90454 -10.47597 -10.40259 -10.36164 -9.94184 -9.69957 -9.29535 -9.02329 -8.72639 -8.58894 -6.27819 -4.35738 1.14436 1.94121 2.42047 2.74304 3.17191 3.20739 3.26623 3.32375 3.36180 4.23897 4.51481 4.79566 5.00314 5.04969 5.07191 5.19167 5.35434 5.55952 5.75991 5.89986 6.14846 6.15889 6.49951 6.62916 6.78838 6.80180 6.97783 7.46548 7.60775 7.77643 7.89317 8.01082 8.42838 8.73132 9.30065 10.79578 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.005782 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.044296 B = 4841.687329 C = 5597.914249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.250 5.250 4 N -0.264 5.264 5 C 0.009 3.991 6 C -0.094 4.094 7 Cl -0.010 7.010 8 C 0.004 3.996 9 C 0.522 3.478 10 O -0.483 6.483 11 O -0.353 6.353 12 C 0.218 3.782 13 H 0.050 0.950 14 C -0.155 4.155 15 C -0.523 4.523 16 H 0.069 0.931 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.195 0.805 29 H 0.017 0.983 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 4.761 12.930 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.041 5.041 4 N -0.097 5.097 5 C -0.168 4.168 6 C -0.132 4.132 7 Cl 0.019 6.981 8 C -0.123 4.123 9 C 0.363 3.637 10 O -0.369 6.369 11 O -0.270 6.270 12 C 0.166 3.834 13 H 0.067 0.933 14 C -0.213 4.213 15 C -0.561 4.561 16 H 0.087 0.913 17 C -0.139 4.139 18 N -0.524 5.524 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.144 0.856 27 H 0.120 0.880 28 H 0.212 0.788 29 H 0.036 0.964 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.438 4.206 13.192 13.853 hybrid contribution 0.335 -0.182 -1.077 1.142 sum -0.102 4.024 12.115 12.766 Atomic orbital electron populations 1.22097 0.93038 1.03964 1.03054 1.22399 0.96598 0.75385 1.06572 1.45974 1.43896 1.12672 1.01548 1.73196 1.17432 1.05008 1.14110 1.23468 1.05405 0.95454 0.92442 1.21290 1.09085 0.90359 0.92462 1.98359 1.89725 1.39500 1.70512 1.20720 1.10867 0.92888 0.87870 1.19451 0.75608 0.82520 0.86118 1.90888 1.46288 1.53762 1.45989 1.86547 1.75394 1.28521 1.36539 1.20745 0.95226 0.96203 0.71263 0.93263 1.22173 0.97395 0.96811 1.04918 1.20994 1.49951 0.91074 0.94038 0.91265 1.24883 0.94622 0.99124 0.95237 1.69903 1.47679 1.35631 0.99151 0.86220 0.77990 0.83522 0.78411 1.19484 1.20669 1.20696 0.92132 0.91173 0.89615 0.85557 0.87996 0.78842 0.96390 0.88086 0.94384 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.24 37.16 0.38 -1.57 16 2 C 0.11 1.43 6.50 -4.04 -0.03 1.40 16 3 N -0.25 -3.85 3.35 -57.13 -0.19 -4.04 16 4 N -0.26 -3.82 11.89 30.61 0.36 -3.45 16 5 C 0.01 0.11 12.03 -17.40 -0.21 -0.10 16 6 C -0.09 -1.50 6.88 -38.86 -0.27 -1.77 16 7 Cl -0.01 -0.15 28.13 -51.86 -1.46 -1.61 16 8 C 0.00 0.07 6.96 -82.02 -0.57 -0.50 16 9 C 0.52 11.02 7.90 34.22 0.27 11.29 16 10 O -0.48 -11.34 15.10 -19.32 -0.29 -11.63 16 11 O -0.35 -7.76 7.33 -40.86 -0.30 -8.05 16 12 C 0.22 5.51 2.56 -27.89 -0.07 5.44 16 13 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 14 C -0.16 -3.75 9.33 37.16 0.35 -3.40 16 15 C -0.52 -13.75 8.90 -34.44 -0.31 -14.06 16 16 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 19 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.13 1.87 6.15 -51.93 -0.32 1.55 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.19 1.81 8.06 -52.48 -0.42 1.38 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 2.63 6.07 -51.93 -0.32 2.32 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -29.17 297.00 -5.86 -35.02 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.51 Total: -0.52 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.55 Total: -1.68 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.80 Total: -31.17 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.59 Total: -19.68 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.46 Total: -1.61 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.17 -5.86 -35.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523925834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.401 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds