Wall clock time and date at job start Mon Mar 30 2020 01:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46795 * 2 1 4 4 N 1.28434 * 125.19260 * 90.02702 * 3 2 1 5 5 C 1.30844 * 111.00162 * 179.97438 * 4 3 2 6 6 C 1.39777 * 107.89506 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 127.33846 * 180.02562 * 6 5 4 8 8 C 1.36792 * 125.19402 * 269.99568 * 3 2 1 9 9 C 1.46867 * 126.91805 * 0.02562 * 8 3 2 10 10 O 1.21568 * 120.00439 * 179.97438 * 9 8 3 11 11 O 1.34836 * 119.99797 * 0.02562 * 9 8 3 12 12 C 1.45197 * 117.00367 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.47121 * 29.99211 * 12 11 9 14 14 C 1.53002 * 109.46878 * 269.99818 * 12 11 9 15 15 C 1.50691 * 109.47472 * 149.99572 * 12 11 9 16 16 H 1.07995 * 120.00349 * 359.97438 * 15 12 11 17 17 C 1.37884 * 120.00217 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99615 * 0.02562 * 17 15 12 19 19 Si 1.86794 * 120.00338 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47005 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47388 * 119.99737 * 19 17 15 22 22 H 1.48493 * 109.47261 * 240.00303 * 19 17 15 23 23 H 1.08995 * 109.47352 * 300.00144 * 1 2 3 24 24 H 1.09001 * 109.46864 * 60.00294 * 1 2 3 25 25 H 1.09001 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47352 * 239.99856 * 2 1 3 27 27 H 1.08996 * 109.46843 * 120.00199 * 2 1 3 28 28 H 1.08005 * 126.05313 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47458 * 59.99742 * 14 12 11 30 30 H 1.08997 * 109.47096 * 179.97438 * 14 12 11 31 31 H 1.08997 * 109.46975 * 299.99715 * 14 12 11 32 32 H 0.97001 * 119.99951 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2655 2.0789 1.0496 5 6 2.6886 3.2748 0.7288 6 6 2.7190 3.3598 -0.6660 7 17 3.2019 4.7222 -1.6276 8 6 2.2812 2.1245 -1.1179 9 6 2.1304 1.6993 -2.5155 10 8 2.4018 2.4680 -3.4174 11 8 1.6900 0.4567 -2.7984 12 6 1.5659 0.1048 -4.2016 13 1 2.3065 0.6558 -4.7813 14 6 0.1626 0.4631 -4.6950 15 6 1.7951 -1.3750 -4.3706 16 1 2.0129 -1.9895 -3.5097 17 6 1.7270 -1.9444 -5.6245 18 7 1.4623 -1.1960 -6.6731 19 14 2.0105 -3.7788 -5.8340 20 1 2.2876 -4.3912 -4.5098 21 1 0.7988 -4.4029 -6.4234 22 1 3.1698 -4.0008 -6.7349 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 2.9654 4.0576 1.4195 29 1 -0.0033 1.5335 -4.5727 30 1 0.0695 0.1994 -5.7484 31 1 -0.5780 -0.0878 -4.1153 32 1 1.4140 -1.5966 -7.5552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523925834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:24 Heat of formation + Delta-G solvation = -36.024271 kcal Electronic energy + Delta-G solvation = -19105.764990 eV Core-core repulsion = 15900.660194 eV Total energy + Delta-G solvation = -3205.104796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.79540 -41.09830 -37.87573 -37.50382 -35.65318 -35.20936 -32.40754 -31.40606 -30.81967 -27.46881 -25.84175 -24.86084 -22.84858 -22.69867 -21.16807 -19.32571 -18.66935 -17.87879 -17.51484 -16.98615 -16.47321 -16.36656 -15.91724 -15.38714 -14.82254 -14.67178 -14.30121 -13.99803 -13.84635 -13.23796 -13.10482 -13.04646 -12.96045 -12.82999 -12.78763 -12.41540 -12.23793 -12.09327 -11.69567 -11.63103 -11.57607 -11.00139 -10.62041 -10.50738 -9.95067 -8.28703 -6.45264 -0.25636 0.72696 1.29624 1.42002 1.43922 1.50019 1.57963 1.72994 1.77583 2.39201 3.03292 3.36999 3.45318 3.88327 4.00693 4.11372 4.23699 4.38040 4.51429 4.72529 4.78274 4.82116 4.83954 5.06030 5.08889 5.18662 5.45379 5.48533 5.59068 5.83685 6.00001 6.53735 6.68808 6.82401 7.25679 8.79350 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.005782 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.044296 B = 4841.687329 C = 5597.914249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.103 3.897 3 N -0.246 5.246 4 N -0.256 5.256 5 C 0.024 3.976 6 C -0.095 4.095 7 Cl -0.009 7.009 8 C -0.028 4.028 9 C 0.521 3.479 10 O -0.516 6.516 11 O -0.346 6.346 12 C 0.221 3.779 13 H 0.009 0.991 14 C -0.142 4.142 15 C -0.541 4.541 16 H 0.074 0.926 17 C 0.017 3.983 18 N -0.917 5.917 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.280 1.280 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.134 0.866 28 H 0.237 0.763 29 H 0.020 0.980 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.247 3.952 15.145 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.015 4.015 3 N -0.037 5.037 4 N -0.090 5.090 5 C -0.151 4.151 6 C -0.134 4.134 7 Cl 0.019 6.981 8 C -0.155 4.155 9 C 0.364 3.636 10 O -0.404 6.404 11 O -0.262 6.262 12 C 0.168 3.832 13 H 0.027 0.973 14 C -0.200 4.200 15 C -0.579 4.579 16 H 0.093 0.907 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.805 3.195 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.206 1.206 23 H 0.091 0.909 24 H 0.061 0.939 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.152 0.848 28 H 0.254 0.746 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.469 3.400 15.432 15.809 hybrid contribution 0.368 0.156 -1.691 1.737 sum -0.101 3.556 13.741 14.194 Atomic orbital electron populations 1.22066 0.92145 1.05037 1.02242 1.22598 0.97308 0.74501 1.07094 1.46195 1.43485 1.13181 1.00871 1.73239 1.16978 1.05354 1.13398 1.24126 1.03611 0.95759 0.91624 1.21595 1.08374 0.89721 0.93691 1.98360 1.89608 1.39261 1.70829 1.20415 1.13927 0.94417 0.86790 1.19954 0.74506 0.81631 0.87522 1.90861 1.47807 1.54296 1.47418 1.86554 1.75767 1.29447 1.34412 1.20445 0.94530 0.95672 0.72514 0.97302 1.21993 0.97176 0.97081 1.03761 1.21276 1.50495 0.91488 0.94610 0.90749 1.25802 0.93952 1.03802 0.94715 1.70029 1.48155 1.37673 0.99685 0.85153 0.77919 0.77754 0.78717 1.18261 1.19893 1.20614 0.90856 0.93913 0.87638 0.87660 0.84769 0.74648 0.96085 0.90027 0.93159 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.24 71.98 0.74 -2.76 16 2 C 0.10 2.52 6.50 86.38 0.56 3.08 16 3 N -0.25 -7.19 3.35 -334.65 -1.12 -8.31 16 4 N -0.26 -6.65 11.89 -57.08 -0.68 -7.33 16 5 C 0.02 0.56 12.03 85.21 1.03 1.59 16 6 C -0.10 -2.91 6.88 22.74 0.16 -2.76 16 7 Cl -0.01 -0.28 28.13 -2.72 -0.08 -0.36 16 8 C -0.03 -1.00 6.96 40.72 0.28 -0.72 16 9 C 0.52 22.56 7.90 70.08 0.55 23.11 16 10 O -0.52 -25.13 15.10 19.61 0.30 -24.84 16 11 O -0.35 -15.58 7.33 -57.48 -0.42 -16.00 16 12 C 0.22 11.58 2.56 29.85 0.08 11.65 16 13 H 0.01 0.55 7.16 -2.38 -0.02 0.53 16 14 C -0.14 -7.06 9.33 71.98 0.67 -6.39 16 15 C -0.54 -28.82 8.90 25.60 0.23 -28.60 16 16 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 17 C 0.02 0.90 5.30 84.66 0.45 1.35 16 18 N -0.92 -51.20 11.32 21.45 0.24 -50.96 16 19 Si 0.98 41.01 29.54 68.60 2.03 43.04 16 20 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.11 3.07 6.15 -2.39 -0.01 3.05 16 27 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.24 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.08 4.38 6.07 -2.39 -0.01 4.37 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -63.71 297.00 6.15 -57.56 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.14 Total: 7.62 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.74 Total: -0.43 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -1.56 Total: -66.60 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.13 Total: -40.84 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -63.71 6.15 -57.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523925834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.539 kcal (2) G-P(sol) polarization free energy of solvation -63.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds