Wall clock time and date at job start Mon Mar 30 2020 01:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47199 * 2 1 4 4 N 1.28429 * 125.19625 * 270.19687 * 3 2 1 5 5 C 1.30848 * 111.00338 * 180.25530 * 4 3 2 6 6 C 1.39784 * 107.89301 * 359.73949 * 5 4 3 7 7 Cl 1.73594 * 127.34224 * 179.97438 * 6 5 4 8 8 C 1.36802 * 125.19144 * 89.99875 * 3 2 1 9 9 C 1.46875 * 126.91212 * 0.02562 * 8 3 2 10 10 O 1.21572 * 119.99505 * 179.70663 * 9 8 3 11 11 O 1.34832 * 119.99916 * 359.70627 * 9 8 3 12 12 C 1.45206 * 116.99290 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47146 * 329.99032 * 12 11 9 14 14 C 1.52997 * 109.47226 * 90.00006 * 12 11 9 15 15 C 1.50706 * 109.46448 * 209.99798 * 12 11 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47347 * 59.99862 * 19 17 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 23 23 H 1.09000 * 109.47622 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47240 * 299.99824 * 1 2 3 25 25 H 1.09005 * 109.47085 * 59.99542 * 1 2 3 26 26 H 1.08997 * 109.46722 * 240.00133 * 2 1 3 27 27 H 1.08999 * 109.47120 * 120.00019 * 2 1 3 28 28 H 1.07997 * 126.05607 * 179.75083 * 5 4 3 29 29 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 30 30 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 31 31 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 32 32 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2617 2.0803 -1.0495 5 6 2.6908 3.2741 -0.7287 6 6 2.7233 3.3583 0.6662 7 17 3.2136 4.7178 1.6279 8 6 2.2812 2.1245 1.1180 9 6 2.1312 1.6988 2.5157 10 8 2.4079 2.4656 3.4176 11 8 1.6866 0.4577 2.7984 12 6 1.5625 0.1058 4.2017 13 1 2.3058 0.6537 4.7807 14 6 0.1610 0.4691 4.6965 15 6 1.7865 -1.3750 4.3698 16 1 2.0003 -1.9901 3.5082 17 6 1.7185 -1.9444 5.6237 18 7 1.4576 -1.1955 6.6728 19 14 1.9968 -3.7797 5.8322 20 1 3.3570 -4.1319 5.3515 21 1 1.8698 -4.1397 7.2673 22 1 0.9843 -4.5268 5.0435 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9701 4.0560 -1.4193 29 1 -0.0010 1.5401 4.5749 30 1 0.0678 0.2045 5.7498 31 1 -0.5822 -0.0789 4.1174 32 1 1.4094 -1.5962 7.5548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523925835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:27 Heat of formation + Delta-G solvation = -19.562302 kcal Electronic energy + Delta-G solvation = -19104.783863 eV Core-core repulsion = 15900.392911 eV Total energy + Delta-G solvation = -3204.390952 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.58365 -39.35449 -36.50996 -35.82976 -34.45114 -33.33225 -30.95019 -29.79250 -29.49269 -25.43393 -24.43295 -23.62016 -21.53213 -21.03789 -19.64338 -17.87243 -16.78395 -16.25425 -16.10611 -15.45293 -14.87530 -14.67596 -14.63769 -14.17428 -13.58466 -13.08067 -12.83148 -12.36020 -12.11638 -12.06455 -11.72375 -11.61271 -11.39112 -11.21935 -11.09521 -10.91803 -10.49809 -10.39956 -10.36679 -9.93989 -9.69373 -9.29457 -9.03930 -8.72591 -8.58023 -6.27231 -4.35460 1.14480 1.94163 2.42049 2.74342 3.19610 3.20408 3.25112 3.32343 3.35597 4.24089 4.51467 4.79644 5.00367 5.05190 5.07330 5.19173 5.35337 5.56005 5.76116 5.89916 6.14877 6.15994 6.50066 6.62960 6.78979 6.80291 6.97838 7.46332 7.61051 7.77573 7.89365 8.01279 8.42968 8.72737 9.30241 10.80039 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.005783 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.176650 B = 4840.661111 C = 5597.948819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.250 5.250 4 N -0.264 5.264 5 C 0.008 3.992 6 C -0.094 4.094 7 Cl -0.010 7.010 8 C 0.004 3.996 9 C 0.522 3.478 10 O -0.483 6.483 11 O -0.353 6.353 12 C 0.218 3.782 13 H 0.050 0.950 14 C -0.155 4.155 15 C -0.524 4.524 16 H 0.068 0.932 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.912 3.088 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.195 0.805 29 H 0.017 0.983 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 4.758 -12.897 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.041 5.041 4 N -0.097 5.097 5 C -0.168 4.168 6 C -0.132 4.132 7 Cl 0.019 6.981 8 C -0.124 4.124 9 C 0.363 3.637 10 O -0.369 6.369 11 O -0.270 6.270 12 C 0.166 3.834 13 H 0.067 0.933 14 C -0.213 4.213 15 C -0.562 4.562 16 H 0.086 0.914 17 C -0.138 4.138 18 N -0.524 5.524 19 Si 0.739 3.261 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.144 0.856 28 H 0.212 0.788 29 H 0.036 0.964 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.424 4.205 -13.149 13.812 hybrid contribution 0.339 -0.193 1.052 1.122 sum -0.085 4.012 -12.097 12.746 Atomic orbital electron populations 1.22098 0.93043 1.03963 1.03057 1.22398 0.96601 0.75382 1.06561 1.45976 1.43962 1.12609 1.01548 1.73194 1.17431 1.05001 1.14118 1.23469 1.05324 0.95540 0.92439 1.21290 1.08984 0.90455 0.92463 1.98358 1.89489 1.39743 1.70500 1.20725 1.10861 0.92894 0.87870 1.19452 0.75631 0.82498 0.86117 1.90889 1.46257 1.53791 1.45994 1.86549 1.75271 1.28634 1.36548 1.20736 0.95229 0.96152 0.71251 0.93262 1.22175 0.97412 0.96794 1.04919 1.20920 1.50319 0.90999 0.93982 0.91368 1.24874 0.94595 0.99108 0.95222 1.69879 1.47527 1.35787 0.99171 0.86330 0.78972 0.83560 0.77260 1.19959 1.20968 1.19912 0.89620 0.91163 0.92138 0.87996 0.85559 0.78843 0.96389 0.88083 0.94389 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.24 37.16 0.38 -1.58 16 2 C 0.11 1.43 6.50 -4.04 -0.03 1.40 16 3 N -0.25 -3.85 3.35 -57.12 -0.19 -4.05 16 4 N -0.26 -3.82 11.89 30.61 0.36 -3.45 16 5 C 0.01 0.11 12.03 -17.39 -0.21 -0.10 16 6 C -0.09 -1.50 6.88 -38.86 -0.27 -1.77 16 7 Cl -0.01 -0.15 28.13 -51.86 -1.46 -1.61 16 8 C 0.00 0.07 6.96 -82.01 -0.57 -0.50 16 9 C 0.52 11.03 7.90 34.23 0.27 11.30 16 10 O -0.48 -11.34 15.10 -19.32 -0.29 -11.63 16 11 O -0.35 -7.76 7.33 -40.85 -0.30 -8.06 16 12 C 0.22 5.53 2.56 -27.88 -0.07 5.46 16 13 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 14 C -0.16 -3.75 9.33 37.16 0.35 -3.40 16 15 C -0.52 -13.80 8.90 -34.44 -0.31 -14.11 16 16 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.30 11.32 55.43 0.63 -23.68 16 19 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.13 1.86 6.16 -51.93 -0.32 1.54 16 28 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 2.63 6.07 -51.93 -0.32 2.31 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -29.13 297.01 -5.85 -34.98 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -3.51 Total: -0.46 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.55 Total: -1.69 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.80 Total: -31.17 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.59 Total: -19.69 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.46 Total: -1.61 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.13 -5.85 -34.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523925835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.420 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds