Wall clock time and date at job start Mon Mar 30 2020 01:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47199 * 2 1 4 4 N 1.28429 * 125.19625 * 270.19687 * 3 2 1 5 5 C 1.30848 * 111.00338 * 180.25530 * 4 3 2 6 6 C 1.39784 * 107.89301 * 359.73949 * 5 4 3 7 7 Cl 1.73594 * 127.34224 * 179.97438 * 6 5 4 8 8 C 1.36802 * 125.19144 * 89.99875 * 3 2 1 9 9 C 1.46875 * 126.91212 * 0.02562 * 8 3 2 10 10 O 1.21572 * 119.99505 * 179.70663 * 9 8 3 11 11 O 1.34832 * 119.99916 * 359.70627 * 9 8 3 12 12 C 1.45206 * 116.99290 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47146 * 329.99032 * 12 11 9 14 14 C 1.52997 * 109.47226 * 90.00006 * 12 11 9 15 15 C 1.50706 * 109.46448 * 209.99798 * 12 11 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47347 * 59.99862 * 19 17 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 23 23 H 1.09000 * 109.47622 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47240 * 299.99824 * 1 2 3 25 25 H 1.09005 * 109.47085 * 59.99542 * 1 2 3 26 26 H 1.08997 * 109.46722 * 240.00133 * 2 1 3 27 27 H 1.08999 * 109.47120 * 120.00019 * 2 1 3 28 28 H 1.07997 * 126.05607 * 179.75083 * 5 4 3 29 29 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 30 30 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 31 31 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 32 32 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2617 2.0803 -1.0495 5 6 2.6908 3.2741 -0.7287 6 6 2.7233 3.3583 0.6662 7 17 3.2136 4.7178 1.6279 8 6 2.2812 2.1245 1.1180 9 6 2.1312 1.6988 2.5157 10 8 2.4079 2.4656 3.4176 11 8 1.6866 0.4577 2.7984 12 6 1.5625 0.1058 4.2017 13 1 2.3058 0.6537 4.7807 14 6 0.1610 0.4691 4.6965 15 6 1.7865 -1.3750 4.3698 16 1 2.0003 -1.9901 3.5082 17 6 1.7185 -1.9444 5.6237 18 7 1.4576 -1.1955 6.6728 19 14 1.9968 -3.7797 5.8322 20 1 3.3570 -4.1319 5.3515 21 1 1.8698 -4.1397 7.2673 22 1 0.9843 -4.5268 5.0435 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9701 4.0560 -1.4193 29 1 -0.0010 1.5401 4.5749 30 1 0.0678 0.2045 5.7498 31 1 -0.5822 -0.0789 4.1174 32 1 1.4094 -1.5962 7.5548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523925835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:27 Heat of formation + Delta-G solvation = -35.927179 kcal Electronic energy + Delta-G solvation = -19105.493497 eV Core-core repulsion = 15900.392911 eV Total energy + Delta-G solvation = -3205.100586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.79459 -41.09723 -37.87544 -37.50343 -35.65218 -35.20792 -32.40692 -31.40527 -30.81871 -27.46410 -25.84100 -24.86124 -22.84691 -22.69729 -21.16745 -19.32535 -18.66381 -17.87584 -17.51341 -16.98333 -16.47350 -16.36916 -15.91876 -15.38854 -14.81890 -14.67173 -14.30025 -13.99079 -13.84453 -13.23720 -13.10202 -13.03629 -12.96174 -12.81134 -12.79297 -12.40965 -12.25213 -12.11589 -11.69632 -11.62376 -11.57532 -11.01969 -10.60577 -10.50619 -9.95064 -8.28093 -6.44999 -0.25628 0.72718 1.29592 1.41938 1.46828 1.49924 1.55815 1.72973 1.77440 2.39511 3.03656 3.37014 3.45355 3.88330 4.00719 4.11386 4.23693 4.37964 4.51485 4.72543 4.78357 4.82204 4.83926 5.06012 5.08879 5.18670 5.45139 5.48501 5.59164 5.83652 6.00147 6.53672 6.68667 6.82330 7.25867 8.79464 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.005783 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.176650 B = 4840.661111 C = 5597.948819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.103 3.897 3 N -0.246 5.246 4 N -0.256 5.256 5 C 0.024 3.976 6 C -0.095 4.095 7 Cl -0.009 7.009 8 C -0.028 4.028 9 C 0.521 3.479 10 O -0.516 6.516 11 O -0.346 6.346 12 C 0.222 3.778 13 H 0.009 0.991 14 C -0.142 4.142 15 C -0.544 4.544 16 H 0.075 0.925 17 C 0.018 3.982 18 N -0.917 5.917 19 Si 0.981 3.019 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.261 1.261 23 H 0.105 0.895 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.134 0.866 27 H 0.105 0.895 28 H 0.237 0.763 29 H 0.020 0.980 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 3.936 -15.120 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.015 4.015 3 N -0.037 5.037 4 N -0.090 5.090 5 C -0.151 4.151 6 C -0.134 4.134 7 Cl 0.019 6.981 8 C -0.156 4.156 9 C 0.364 3.636 10 O -0.404 6.404 11 O -0.262 6.262 12 C 0.169 3.831 13 H 0.027 0.973 14 C -0.200 4.200 15 C -0.581 4.581 16 H 0.093 0.907 17 C -0.182 4.182 18 N -0.555 5.555 19 Si 0.804 3.196 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.185 1.185 23 H 0.124 0.876 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.152 0.848 27 H 0.124 0.876 28 H 0.253 0.747 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.463 3.386 -15.398 15.773 hybrid contribution 0.374 0.150 1.665 1.714 sum -0.089 3.537 -13.733 14.181 Atomic orbital electron populations 1.22067 0.92165 1.05032 1.02237 1.22599 0.97299 0.74496 1.07100 1.46198 1.43551 1.13119 1.00869 1.73237 1.16978 1.05343 1.13405 1.24127 1.03537 0.95841 0.91620 1.21596 1.08274 0.89818 0.93693 1.98360 1.89373 1.39505 1.70818 1.20419 1.13922 0.94424 0.86791 1.19957 0.74530 0.81610 0.87522 1.90862 1.47774 1.54328 1.47425 1.86556 1.75644 1.29556 1.34420 1.20437 0.94519 0.95643 0.72504 0.97310 1.21995 0.97191 0.97058 1.03767 1.21222 1.50849 0.91434 0.94604 0.90734 1.25796 0.93909 1.03809 0.94693 1.70013 1.48034 1.37791 0.99653 0.85261 0.79220 0.77793 0.77330 1.19424 1.20712 1.18508 0.87646 0.93914 0.90867 0.84756 0.87645 0.74650 0.96084 0.90012 0.93182 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 10.24 71.98 0.74 -2.77 16 2 C 0.10 2.52 6.50 86.38 0.56 3.08 16 3 N -0.25 -7.19 3.35 -334.64 -1.12 -8.31 16 4 N -0.26 -6.65 11.89 -57.08 -0.68 -7.33 16 5 C 0.02 0.56 12.03 85.21 1.03 1.59 16 6 C -0.10 -2.91 6.88 22.74 0.16 -2.76 16 7 Cl -0.01 -0.28 28.13 -2.72 -0.08 -0.36 16 8 C -0.03 -1.00 6.96 40.72 0.28 -0.72 16 9 C 0.52 22.57 7.90 70.08 0.55 23.12 16 10 O -0.52 -25.15 15.10 19.60 0.30 -24.85 16 11 O -0.35 -15.58 7.33 -57.44 -0.42 -16.00 16 12 C 0.22 11.61 2.56 29.85 0.08 11.69 16 13 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 14 C -0.14 -7.06 9.33 71.98 0.67 -6.39 16 15 C -0.54 -28.96 8.90 25.60 0.23 -28.73 16 16 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 17 C 0.02 0.94 5.30 84.66 0.45 1.39 16 18 N -0.92 -51.20 11.32 21.45 0.24 -50.96 16 19 Si 0.98 40.96 29.54 68.60 2.03 42.99 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.11 3.06 6.16 -2.39 -0.01 3.05 16 28 H 0.24 3.32 8.06 -2.91 -0.02 3.29 16 29 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 4.39 6.07 -2.39 -0.01 4.38 16 31 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -63.65 297.01 6.15 -57.50 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.14 Total: 7.81 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 4.74 Total: -0.50 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -1.56 Total: -66.59 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.13 Total: -40.85 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -63.65 6.15 -57.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523925835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.572 kcal (2) G-P(sol) polarization free energy of solvation -63.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds