Wall clock time and date at job start Mon Mar 30 2020 01:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99808 * 2 1 4 4 H 1.48492 * 109.46881 * 269.99717 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99870 * 3 2 1 6 6 H 1.48498 * 109.46800 * 149.99671 * 3 2 1 7 7 C 1.38795 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99585 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.80991 * 100.00268 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47295 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46976 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47085 * 180.02562 * 12 11 10 14 14 C 1.76199 * 100.00182 * 180.02562 * 13 12 11 15 15 N 1.33194 * 120.04976 * 0.02562 * 14 13 12 16 16 C 1.32105 * 120.07930 * 180.02562 * 15 14 13 17 17 N 1.32186 * 120.18527 * 0.02562 * 16 15 14 18 18 C 1.33112 * 120.09985 * 359.97438 * 17 16 15 19 19 N 1.38006 * 120.04511 * 180.02562 * 18 17 16 20 20 N 1.32847 * 119.91942 * 359.72829 * 18 17 16 21 21 H 0.97000 * 120.00161 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47074 * 59.99994 * 10 9 7 23 23 H 1.09004 * 109.47451 * 300.00141 * 10 9 7 24 24 H 1.09001 * 109.46310 * 60.00251 * 11 10 9 25 25 H 1.08996 * 109.46979 * 300.00032 * 11 10 9 26 26 H 1.09005 * 109.46968 * 60.00604 * 12 11 10 27 27 H 1.09000 * 109.47398 * 300.00482 * 12 11 10 28 28 H 1.07998 * 119.90822 * 180.02562 * 16 15 14 29 29 H 0.97008 * 119.99552 * 359.97438 * 19 18 17 30 30 H 0.96992 * 120.00555 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5158 -3.8913 0.0021 11 6 1.9793 -5.3242 0.0030 12 6 3.1514 -6.3076 0.0037 13 16 2.5168 -8.0027 0.0040 14 6 4.0345 -8.8977 0.0055 15 7 5.1946 -8.2434 0.0067 16 6 6.3329 -8.9139 0.0073 17 7 6.3257 -10.2357 0.0064 18 6 5.1705 -10.8970 0.0053 19 7 5.1642 -12.2770 0.0048 20 7 4.0234 -10.2269 0.0106 21 1 -0.4850 0.8400 -0.0004 22 1 3.1238 -3.7308 0.8926 23 1 3.1252 -3.7317 -0.8874 24 1 1.3712 -5.4849 -0.8872 25 1 1.3703 -5.4836 0.8928 26 1 3.7599 -6.1470 0.8937 27 1 3.7601 -6.1481 -0.8863 28 1 7.2720 -8.3805 0.0087 29 1 6.0022 -12.7658 0.0049 30 1 4.3221 -12.7583 0.0036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559478334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:49 Heat of formation + Delta-G solvation = 48.842388 kcal Electronic energy + Delta-G solvation = -15001.603763 eV Core-core repulsion = 12277.268390 eV Total energy + Delta-G solvation = -2724.335373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.046 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.63237 -36.11520 -34.39741 -34.01369 -32.43565 -31.98294 -27.25403 -25.78252 -25.37058 -24.51472 -21.52621 -19.31034 -19.15641 -17.49031 -16.62982 -16.28026 -16.01988 -15.19932 -15.16817 -14.81027 -14.52440 -14.33621 -13.90031 -13.10161 -12.87128 -12.33855 -11.88251 -11.80610 -11.54359 -11.07643 -10.98449 -10.67586 -10.58817 -10.54498 -9.96049 -9.75240 -9.58874 -9.35096 -9.06527 -8.33402 -8.10396 -6.54806 -6.23533 -3.94304 0.54843 0.88964 0.96319 2.01467 2.67830 3.21837 3.22583 3.29461 3.55188 3.56288 3.66260 4.07940 4.21192 4.64820 5.06800 5.13053 5.14065 5.38355 5.59152 5.68584 5.75692 5.96884 6.05499 6.21036 6.22723 6.44207 6.65506 6.72367 7.03366 7.60308 8.04312 8.36140 9.22914 10.84645 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.051365 B = 0.002891 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.988601 B = 9683.761275 C =10202.999750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.073 0.927 9 S -0.129 6.129 10 C -0.107 4.107 11 C -0.087 4.087 12 C -0.103 4.103 13 S 0.032 5.968 14 C 0.373 3.627 15 N -0.599 5.599 16 C 0.393 3.607 17 N -0.618 5.618 18 C 0.607 3.393 19 N -0.805 5.805 20 N -0.592 5.592 21 H 0.267 0.733 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.209 0.791 29 H 0.418 0.582 30 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.244 -21.296 -0.005 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.092 0.908 9 S 0.099 5.901 10 C -0.258 4.258 11 C -0.128 4.128 12 C -0.253 4.253 13 S 0.266 5.734 14 C -0.011 4.011 15 N -0.327 5.327 16 C 0.092 3.908 17 N -0.351 5.351 18 C 0.237 3.763 19 N -0.354 5.354 20 N -0.326 5.326 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.225 0.775 29 H 0.250 0.750 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.767 -21.764 0.006 23.109 hybrid contribution 3.346 1.183 -0.009 3.549 sum 11.113 -20.581 -0.003 23.390 Atomic orbital electron populations 1.70019 1.05922 1.27370 1.47197 1.25018 0.95089 0.99111 0.94582 0.86157 0.79444 0.81507 0.78371 1.20266 1.20768 1.19665 1.22681 0.94553 0.90649 1.58559 0.90850 1.84651 1.09165 0.99433 1.96887 1.23234 1.03129 0.96056 1.03378 1.21120 0.95478 0.92197 1.03967 1.23849 1.02583 0.91366 1.07523 1.86095 0.99067 1.00559 1.87653 1.25346 0.98148 0.89642 0.87936 1.69506 0.98677 1.40555 1.24011 1.25143 0.96843 0.85913 0.82918 1.68637 1.28774 1.11321 1.26361 1.19375 0.85055 0.87707 0.84133 1.41721 1.12991 1.00728 1.80010 1.68693 1.29163 1.08244 1.26472 0.92280 0.91707 0.91706 0.90440 0.90429 0.88367 0.88372 0.77454 0.75034 0.75018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.80 13.22 55.49 0.73 -25.06 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -14.61 9.50 30.94 0.29 -14.32 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.13 -3.32 21.44 -107.50 -2.30 -5.63 16 10 C -0.11 -2.08 5.67 37.16 0.21 -1.87 16 11 C -0.09 -1.35 5.22 -26.73 -0.14 -1.49 16 12 C -0.10 -1.35 4.85 37.16 0.18 -1.17 16 13 S 0.03 0.41 22.27 -107.50 -2.39 -1.99 16 14 C 0.37 5.05 7.90 -89.97 -0.71 4.34 16 15 N -0.60 -7.63 9.31 -14.78 -0.14 -7.77 16 16 C 0.39 4.16 12.40 -91.55 -1.13 3.03 16 17 N -0.62 -6.85 10.53 -15.38 -0.16 -7.02 16 18 C 0.61 6.77 8.76 -322.13 -2.82 3.95 16 19 N -0.80 -5.36 9.05 29.85 0.27 -5.09 16 20 N -0.59 -7.72 10.53 -14.16 -0.15 -7.87 16 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 23 H 0.06 1.24 8.14 -51.91 -0.42 0.81 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.10 1.28 8.13 -51.91 -0.42 0.86 16 27 H 0.10 1.28 8.13 -51.92 -0.42 0.86 16 28 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.42 1.84 8.95 -40.82 -0.37 1.47 16 30 H 0.42 2.08 8.95 -40.82 -0.37 1.71 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -33.15 297.90 -12.13 -45.27 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.23 Total: -0.08 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -4.22 Total: -5.62 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.56 Total: -52.81 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -4.70 Total: -7.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.15 -12.13 -45.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559478334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.116 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds