Wall clock time and date at job start Mon Mar 30 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35793 * 117.00054 * 2 1 4 4 N 1.29838 * 121.61806 * 359.71356 * 3 2 1 5 5 S 1.69452 * 107.90801 * 180.27099 * 4 3 2 6 6 C 1.71991 * 96.12858 * 0.02562 * 5 4 3 7 7 C 1.50696 * 127.27345 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47083 * 270.02745 * 7 6 5 9 9 C 1.46901 * 111.00008 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46776 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00072 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99734 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99820 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99825 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.46788 * 89.99948 * 14 12 10 16 16 H 1.48500 * 109.46815 * 209.99310 * 14 12 10 17 17 H 1.48497 * 109.47089 * 329.99596 * 14 12 10 18 18 C 1.38036 * 105.45753 * 0.02562 * 6 5 4 19 19 C 1.46999 * 123.13177 * 180.02562 * 18 6 5 20 20 O 1.21560 * 119.99957 * 270.00202 * 19 18 6 21 21 O 1.34790 * 119.99834 * 89.99882 * 19 18 6 22 22 H 1.08997 * 109.47344 * 300.00223 * 1 2 3 23 23 H 1.09009 * 109.47212 * 59.99749 * 1 2 3 24 24 H 1.08999 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47433 * 30.01974 * 7 6 5 26 26 H 1.08995 * 109.47272 * 150.02449 * 7 6 5 27 27 H 1.00894 * 110.99983 * 56.04084 * 8 7 6 28 28 H 1.08998 * 109.46739 * 299.99666 * 9 8 7 29 29 H 1.08998 * 109.47184 * 59.99886 * 9 8 7 30 30 H 0.96997 * 119.99480 * 180.02562 * 13 12 10 31 31 H 0.96700 * 117.00122 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 7 1.3694 2.3184 -0.0055 5 16 2.4747 3.6028 -0.0111 6 6 3.8907 2.6266 -0.0067 7 6 5.3227 3.0959 -0.0092 8 7 5.7876 3.2423 -1.3951 9 6 7.1832 3.6989 -1.4367 10 6 7.6240 3.8366 -2.8712 11 1 6.9364 3.6074 -3.6718 12 6 8.9053 4.2551 -3.1615 13 7 9.2902 4.3748 -4.4134 14 14 10.0949 4.6507 -1.7766 15 1 10.8460 3.4250 -1.4041 16 1 11.0475 5.6974 -2.2263 17 1 9.3370 5.1441 -0.5988 18 6 3.4384 1.3224 -0.0015 19 6 4.3382 0.1600 0.0040 20 8 4.7111 -0.3250 -1.0464 21 8 4.7499 -0.3679 1.1739 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 5.3910 4.0570 0.5003 26 1 5.9453 2.3656 0.5076 27 1 5.1873 3.8656 -1.9139 28 1 7.2648 4.6641 -0.9369 29 1 7.8184 2.9724 -0.9299 30 1 10.1917 4.6689 -4.6175 31 1 5.3414 -1.1315 1.1270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607364312.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:56 Heat of formation + Delta-G solvation = -75.322171 kcal Electronic energy + Delta-G solvation = -18350.174388 eV Core-core repulsion = 15145.409214 eV Total energy + Delta-G solvation = -3204.765175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76825 -39.46095 -37.14372 -35.89366 -35.66225 -32.78401 -31.54162 -28.90134 -27.65186 -25.70712 -23.62131 -22.60709 -21.28219 -19.95761 -18.63456 -18.02596 -17.53695 -16.86864 -16.41837 -16.30850 -15.40248 -14.94598 -14.67521 -14.47573 -13.99032 -13.60232 -13.34320 -13.23723 -12.58970 -12.44557 -12.08788 -11.72418 -11.45710 -11.36656 -11.34101 -11.10367 -10.75582 -10.66219 -10.50505 -10.00145 -9.63130 -9.38565 -8.64266 -8.55542 -7.73249 -6.10096 -4.09401 0.35519 1.06773 1.40918 2.01369 2.20266 2.86648 3.17864 3.25275 3.32411 3.32723 4.36808 4.39539 4.82280 4.87302 4.93245 5.01908 5.09759 5.22668 5.30853 5.42471 5.61859 5.67010 5.89522 6.48727 6.57593 6.80815 6.84816 7.42147 7.68972 7.93936 8.05888 8.54909 8.98141 9.49822 11.03017 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.004712 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.709153 B = 5940.444284 C = 6350.525417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.293 6.293 3 C 0.347 3.653 4 N -0.539 5.539 5 S 0.345 5.655 6 C -0.093 4.093 7 C 0.117 3.883 8 N -0.668 5.668 9 C 0.166 3.834 10 C -0.519 4.519 11 H 0.081 0.919 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.877 3.123 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.267 1.267 18 C -0.190 4.190 19 C 0.565 3.435 20 O -0.476 6.476 21 O -0.511 6.511 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.341 0.659 28 H -0.010 1.010 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.229 -5.273 14.073 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.199 6.199 3 C 0.133 3.867 4 N -0.379 5.379 5 S 0.496 5.504 6 C -0.223 4.223 7 C -0.014 4.014 8 N -0.301 5.301 9 C 0.039 3.961 10 C -0.557 4.557 11 H 0.099 0.901 12 C -0.132 4.132 13 N -0.535 5.535 14 Si 0.704 3.296 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.211 4.211 19 C 0.402 3.598 20 O -0.360 6.360 21 O -0.324 6.324 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.159 0.841 28 H 0.008 0.992 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -16.427 -4.361 13.591 21.761 hybrid contribution 1.800 -0.851 0.797 2.145 sum -14.626 -5.212 14.388 21.168 Atomic orbital electron populations 1.23014 0.76343 1.03719 1.02718 1.86277 1.23316 1.22383 1.87893 1.19550 0.88097 0.85541 0.93525 1.76150 1.26505 1.00914 1.34321 1.83946 0.87992 1.11364 1.67102 1.26257 1.04086 0.95530 0.96468 1.20571 0.85831 1.00425 0.94590 1.60587 1.05833 1.56331 1.07300 1.20064 0.84099 0.93089 0.98851 1.20983 0.98869 1.45173 0.90675 0.90089 1.24889 0.97868 0.94973 0.95429 1.69893 1.18923 1.47166 1.17526 0.86833 0.81354 0.78575 0.82789 1.20066 1.21100 1.19229 1.18186 0.90397 0.92933 1.19550 1.19477 0.77690 0.81291 0.81320 1.90991 1.52831 1.59239 1.32933 1.84631 1.63688 1.49000 1.35035 0.91969 0.91870 0.87930 0.92796 0.88957 0.84106 0.99216 0.95627 0.92521 0.72832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.46 101.05 1.06 1.40 16 2 O -0.29 -3.95 10.21 -19.09 -0.19 -4.14 16 3 C 0.35 5.08 7.44 -17.83 -0.13 4.95 16 4 N -0.54 -7.42 11.05 29.44 0.33 -7.09 16 5 S 0.34 4.25 23.69 -107.50 -2.55 1.71 16 6 C -0.09 -1.36 6.18 -34.38 -0.21 -1.57 16 7 C 0.12 1.84 5.99 -4.97 -0.03 1.81 16 8 N -0.67 -13.45 6.48 -116.34 -0.75 -14.20 16 9 C 0.17 3.89 4.51 -4.98 -0.02 3.86 16 10 C -0.52 -14.67 9.87 -34.44 -0.34 -15.01 16 11 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 14 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 18 C -0.19 -2.98 5.74 -105.86 -0.61 -3.58 16 19 C 0.56 9.15 7.14 34.28 0.24 9.39 16 20 O -0.48 -9.38 17.90 -19.31 -0.35 -9.72 16 21 O -0.51 -6.29 13.44 -40.74 -0.55 -6.84 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.58 8.13 -51.92 -0.42 0.16 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.44 7.85 -51.93 -0.41 1.03 16 27 H 0.34 6.56 8.72 -39.29 -0.34 6.22 16 28 H -0.01 -0.22 7.20 -51.93 -0.37 -0.60 16 29 H 0.03 0.61 7.57 -51.93 -0.39 0.21 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.41 3.15 9.11 45.56 0.42 3.56 16 LS Contribution 297.11 15.07 4.48 4.48 Total: -1.00 -34.53 297.11 -6.00 -40.54 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.38 Total: 2.32 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.14 Total: 3.18 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.35 Total: -47.89 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.09 Total: -20.71 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -2.55 Total: 1.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.53 -6.00 -40.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607364312.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.785 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds