Wall clock time and date at job start Mon Mar 30 2020 01:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47051 * 70.62264 * 3 2 1 5 5 C 1.37101 * 120.00186 * 86.36946 * 4 3 2 6 6 H 1.08001 * 119.99612 * 313.68204 * 5 4 3 7 7 C 1.38950 * 119.99837 * 133.68254 * 5 4 3 8 8 N 1.31419 * 119.99794 * 164.04981 * 7 5 4 9 9 Si 1.86799 * 120.00227 * 344.04666 * 7 5 4 10 10 H 1.48501 * 109.46886 * 95.40380 * 9 7 5 11 11 H 1.48500 * 109.46994 * 215.40386 * 9 7 5 12 12 H 1.48490 * 109.47041 * 335.40050 * 9 7 5 13 13 C 1.34777 * 120.00044 * 266.36327 * 4 3 2 14 14 O 1.21287 * 120.00404 * 184.83221 * 13 4 3 15 15 C 1.50699 * 119.99748 * 4.83667 * 13 4 3 16 16 H 1.09000 * 109.64148 * 327.05732 * 15 13 4 17 17 C 1.53876 * 109.64859 * 87.48525 * 15 13 4 18 18 C 1.54973 * 106.65999 * 167.14920 * 17 15 13 19 19 S 1.83285 * 102.48016 * 317.38892 * 18 17 15 20 20 O 1.42108 * 109.35341 * 269.89499 * 19 18 17 21 21 O 1.42101 * 109.47558 * 136.73446 * 19 18 17 22 22 C 1.54165 * 109.64630 * 206.63137 * 15 13 4 23 23 H 1.09005 * 109.46855 * 190.61938 * 3 2 1 24 24 H 1.09000 * 109.47567 * 310.61684 * 3 2 1 25 25 H 0.96998 * 119.99917 * 179.97438 * 8 7 5 26 26 H 1.08994 * 110.02719 * 286.32513 * 17 15 13 27 27 H 1.09001 * 110.02369 * 47.74390 * 17 15 13 28 28 H 1.08999 * 110.75819 * 199.18381 * 18 17 15 29 29 H 1.09005 * 111.07165 * 75.73519 * 18 17 15 30 30 H 1.08998 * 110.31941 * 331.13714 * 22 15 13 31 31 H 1.08999 * 110.32122 * 93.33282 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.4574 -1.3030 5 6 3.2537 0.4377 -2.3295 6 1 2.4732 1.1517 -2.5476 7 6 4.4171 0.4263 -3.0891 8 7 4.4521 1.0473 -4.2468 9 14 5.9315 -0.4716 -2.4648 10 1 5.9711 -1.8379 -3.0451 11 1 7.1507 0.2736 -2.8692 12 1 5.8766 -0.5642 -0.9838 13 6 3.3915 -1.7587 -1.4926 14 8 3.8782 -2.1237 -2.5418 15 6 3.1165 -2.7605 -0.4008 16 1 3.2523 -2.2884 0.5723 17 6 1.6736 -3.2801 -0.5268 18 6 1.5660 -4.5207 0.3957 19 16 3.1373 -5.4021 0.0590 20 8 2.9454 -6.3136 -1.0142 21 8 3.6965 -5.8580 1.2832 22 6 4.0826 -3.9541 -0.5372 23 1 2.9708 1.0109 0.1894 24 1 2.9717 -0.6682 0.7801 25 1 5.2644 1.0397 -4.7769 26 1 0.9709 -2.5132 -0.2011 27 1 1.4672 -3.5619 -1.5594 28 1 0.7101 -5.1358 0.1176 29 1 1.5045 -4.2259 1.4433 30 1 4.3688 -4.0921 -1.5798 31 1 4.9664 -3.7983 0.0814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:45 Heat of formation + Delta-G solvation = -53.858282 kcal Electronic energy + Delta-G solvation = -19530.270885 eV Core-core repulsion = 16326.436454 eV Total energy + Delta-G solvation = -3203.834431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.85929 -37.06224 -36.52578 -36.12972 -35.76681 -34.63771 -32.29209 -30.10664 -27.94344 -26.50866 -24.22772 -22.09702 -19.68784 -18.87377 -18.33366 -17.59000 -16.85708 -16.41910 -16.00364 -15.68679 -15.31817 -14.42644 -14.23821 -14.08851 -13.74639 -13.67566 -13.21449 -12.74686 -12.64021 -12.46661 -12.29644 -12.19223 -12.04272 -11.87854 -11.83116 -11.57697 -11.13444 -10.91469 -10.84341 -10.38948 -10.31630 -10.15230 -8.95796 -8.77185 -8.09132 -6.40035 -4.29936 -0.00444 2.43922 2.83390 2.98020 3.01851 3.25432 3.42529 3.49047 3.56106 3.89705 4.13192 4.23349 4.29169 4.38893 4.57062 4.68237 4.78945 4.79402 4.91327 5.21976 5.30332 5.45448 5.51195 5.57492 5.73224 5.89471 5.91879 7.56995 7.62882 7.77345 8.41500 8.53228 9.13080 9.36526 10.64456 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.008160 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.556146 B = 3430.482956 C = 4352.102507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.202 3.798 3 C 0.184 3.816 4 N -0.456 5.456 5 C -0.360 4.360 6 H 0.098 0.902 7 C 0.094 3.906 8 N -0.858 5.858 9 Si 0.914 3.086 10 H -0.255 1.255 11 H -0.306 1.306 12 H -0.278 1.278 13 C 0.467 3.533 14 O -0.519 6.519 15 C -0.110 4.110 16 H 0.108 0.892 17 C -0.110 4.110 18 C -0.584 4.584 19 S 2.386 3.614 20 O -0.935 6.935 21 O -0.944 6.944 22 C -0.580 4.580 23 H 0.127 0.873 24 H 0.108 0.892 25 H 0.276 0.724 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.158 0.842 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 -6.730 11.901 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.118 4.118 3 C 0.057 3.943 4 N -0.179 5.179 5 C -0.485 4.485 6 H 0.115 0.885 7 C -0.117 4.117 8 N -0.492 5.492 9 Si 0.744 3.256 10 H -0.180 1.180 11 H -0.235 1.235 12 H -0.203 1.203 13 C 0.255 3.745 14 O -0.398 6.398 15 C -0.133 4.133 16 H 0.126 0.874 17 C -0.149 4.149 18 C -0.714 4.714 19 S 2.570 3.430 20 O -0.933 6.933 21 O -0.941 6.941 22 C -0.710 4.710 23 H 0.144 0.856 24 H 0.126 0.874 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.176 0.824 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.194 -7.814 11.275 13.893 hybrid contribution 0.911 0.654 0.147 1.131 sum -1.283 -7.160 11.423 13.542 Atomic orbital electron populations 1.81111 1.13286 1.09225 1.08284 1.30173 0.96055 0.92674 0.92860 1.19332 0.80808 1.04590 0.89549 1.43500 1.59374 1.05764 1.09233 1.18834 1.04358 1.16433 1.08897 0.88452 1.25378 0.98630 0.93726 0.93959 1.69709 1.28950 1.40760 1.09739 0.86265 0.79697 0.80789 0.78835 1.18024 1.23478 1.20324 1.19987 0.83383 0.82726 0.88373 1.90550 1.44014 1.77562 1.27722 1.21812 0.93846 0.95796 1.01803 0.87439 1.22136 0.95474 0.96409 1.00864 1.30589 1.21209 1.10636 1.08950 1.09142 0.79764 0.78338 0.75797 1.93623 1.84928 1.59643 1.55065 1.93593 1.76520 1.79596 1.44409 1.30537 1.10705 1.14212 1.15523 0.85555 0.87422 0.91381 0.88381 0.88366 0.84277 0.84333 0.82429 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.50 18.53 42.15 0.78 -6.72 16 2 C 0.20 3.05 14.15 -20.76 -0.29 2.75 16 3 C 0.18 2.53 5.70 -6.83 -0.04 2.49 16 4 N -0.46 -9.02 2.07 -117.93 -0.24 -9.26 16 5 C -0.36 -8.94 9.67 -14.93 -0.14 -9.08 16 6 H 0.10 2.61 8.06 -52.49 -0.42 2.18 16 7 C 0.09 2.50 4.94 -17.46 -0.09 2.41 16 8 N -0.86 -24.33 13.96 55.50 0.77 -23.56 16 9 Si 0.91 21.60 24.68 -169.99 -4.20 17.41 16 10 H -0.25 -6.33 6.36 56.52 0.36 -5.97 16 11 H -0.31 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 13 C 0.47 9.14 5.13 -10.99 -0.06 9.08 16 14 O -0.52 -12.38 11.01 5.55 0.06 -12.32 16 15 C -0.11 -1.48 2.37 -90.71 -0.21 -1.70 16 16 H 0.11 1.02 5.87 -51.93 -0.31 0.72 16 17 C -0.11 -1.32 5.77 -25.23 -0.15 -1.47 16 18 C -0.58 -5.28 7.31 38.20 0.28 -5.00 16 19 S 2.39 28.01 6.10 -107.50 -0.66 27.35 16 20 O -0.94 -14.52 18.15 -57.73 -1.05 -15.57 16 21 O -0.94 -13.14 18.15 -57.73 -1.05 -14.19 16 22 C -0.58 -7.37 6.67 37.77 0.25 -7.12 16 23 H 0.13 1.51 8.07 -51.93 -0.42 1.09 16 24 H 0.11 0.99 5.75 -51.93 -0.30 0.69 16 25 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.10 1.18 6.45 -51.93 -0.33 0.84 16 27 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 28 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.16 2.34 6.87 -51.93 -0.36 1.99 16 31 H 0.14 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -36.22 276.85 -4.85 -41.07 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -3.00 Total: -0.75 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.45 Total: -7.63 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 1.31 Total: -39.54 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -2.03 Total: -42.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.20 Total: 17.41 kcal Atomic # 16 Polarization: 28.01 SS G_CDS: -0.66 Total: 27.35 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -36.22 -4.85 -41.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.785 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds