Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00288 * 2 1 4 4 H 1.48501 * 109.47254 * 239.99902 * 3 2 1 5 5 H 1.48501 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47294 * 120.00056 * 3 2 1 7 7 C 1.37887 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47344 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99723 * 180.02562 * 11 10 9 13 13 O 1.21275 * 120.00274 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99811 * 179.97438 * 12 11 10 15 15 S 1.81398 * 109.47136 * 179.97438 * 14 12 11 16 16 C 1.76199 * 103.00071 * 179.97438 * 15 14 12 17 17 N 1.31156 * 125.55966 * 359.69433 * 16 15 14 18 18 N 1.40415 * 106.90705 * 179.85611 * 17 16 15 19 19 H 0.96997 * 126.76541 * 180.13437 * 18 17 16 20 20 C 1.34766 * 106.47665 * 0.40292 * 18 17 16 21 21 O 1.35423 * 125.97117 * 179.77813 * 20 18 17 22 22 N 1.31412 * 108.06075 * 359.75186 * 20 18 17 23 23 H 0.97002 * 119.99828 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47219 * 59.99382 * 9 7 2 25 25 H 1.09004 * 109.46870 * 299.99967 * 9 7 2 26 26 H 1.09002 * 109.46892 * 59.99717 * 10 9 7 27 27 H 1.09000 * 109.46765 * 299.99773 * 10 9 7 28 28 H 0.96996 * 120.00281 * 359.97438 * 11 10 9 29 29 H 1.08998 * 109.46894 * 59.99918 * 14 12 11 30 30 H 1.09000 * 109.47022 * 299.99473 * 14 12 11 31 31 H 0.96709 * 113.99982 * 269.99548 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1865 -6.0981 0.0003 13 8 3.3992 -6.0981 0.0007 14 6 1.4329 -7.4032 0.0003 15 16 2.6116 -8.7820 0.0001 16 6 1.5642 -10.1989 0.0009 17 7 0.2528 -10.1780 0.0070 18 7 -0.1770 -11.5147 0.0017 19 1 -1.0944 -11.8296 0.0025 20 6 0.9364 -12.2741 0.0015 21 8 0.9759 -13.6278 0.0014 22 7 1.9770 -11.4716 0.0009 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6045 -0.8895 28 1 0.5426 -4.9308 0.0000 29 1 0.8066 -7.4610 -0.8899 30 1 0.8060 -7.4608 0.8901 31 1 0.9875 -14.0211 0.8848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625047617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = 8.729876 kcal Electronic energy + Delta-G solvation = -17121.128505 eV Core-core repulsion = 13952.300852 eV Total energy + Delta-G solvation = -3168.827653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.48445 -39.30336 -38.18866 -34.98372 -33.04484 -32.92750 -31.27229 -30.56594 -28.80580 -24.66698 -23.75582 -22.76057 -21.12473 -20.39226 -19.90673 -18.16172 -17.10028 -16.78840 -16.59536 -16.20880 -15.62329 -15.24053 -14.83260 -14.47859 -13.99551 -13.79982 -13.74340 -13.14537 -12.50267 -12.30807 -11.96259 -11.25488 -11.12337 -11.03875 -10.96631 -10.68343 -10.40617 -10.37617 -10.23866 -9.97670 -9.57062 -9.29114 -8.64722 -8.41339 -7.88920 -6.11655 -4.14728 0.78777 0.89174 1.58719 2.05697 2.23987 2.77108 3.30465 3.34295 3.36704 3.44732 3.54786 4.34779 4.40033 4.86612 4.88919 5.16714 5.19480 5.25524 5.58274 6.02259 6.24942 6.29087 6.67068 6.77442 6.87129 7.35974 7.46499 7.57154 7.81541 7.86884 8.22672 8.44291 8.90926 9.50284 10.99861 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.066742 B = 0.002607 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.424813 B =10736.871898 C =11127.975578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.713 5.713 12 C 0.526 3.474 13 O -0.534 6.534 14 C -0.161 4.161 15 S 0.116 5.884 16 C 0.208 3.792 17 N -0.302 5.302 18 N -0.480 5.480 19 H 0.442 0.558 20 C 0.463 3.537 21 O -0.441 6.441 22 N -0.509 5.509 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.401 0.599 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 -24.457 1.777 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.363 5.363 12 C 0.309 3.691 13 O -0.412 6.412 14 C -0.313 4.313 15 S 0.342 5.658 16 C -0.182 4.182 17 N -0.140 5.140 18 N -0.211 5.211 19 H 0.288 0.712 20 C 0.146 3.854 21 O -0.241 6.241 22 N -0.249 5.249 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.451 -23.837 1.184 23.911 hybrid contribution -2.356 0.078 0.478 2.405 sum -3.807 -23.759 1.662 24.119 Atomic orbital electron populations 1.69942 1.06105 1.27043 1.50213 1.24999 0.94904 0.99449 0.94928 0.86556 0.79507 0.82564 0.78823 1.20070 1.21259 1.20079 1.21004 0.93248 0.90324 1.51596 0.92217 1.19332 0.94193 0.91038 0.97939 1.21818 0.96119 0.80951 1.01166 1.46227 1.10746 1.06088 1.73216 1.19422 0.87796 0.84336 0.77570 1.90739 1.13298 1.87074 1.50047 1.23871 1.03056 0.95474 1.08873 1.86618 1.01231 0.86534 1.91452 1.26490 0.93069 0.98155 1.00456 1.78536 1.11292 0.94333 1.29876 1.48260 1.10015 1.04677 1.58161 0.71160 1.21279 0.83029 0.84984 0.96125 1.84870 1.94604 1.09681 1.34973 1.70848 1.27758 0.99440 1.26896 0.92758 0.95866 0.95860 0.92187 0.92190 0.76541 0.86073 0.86077 0.72427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.71 -11.64 5.56 -60.30 -0.33 -11.97 16 12 C 0.53 8.37 7.85 -10.98 -0.09 8.29 16 13 O -0.53 -10.46 15.86 5.56 0.09 -10.37 16 14 C -0.16 -1.92 6.04 36.01 0.22 -1.70 16 15 S 0.12 1.54 21.30 -107.50 -2.29 -0.75 16 16 C 0.21 2.66 8.28 -90.95 -0.75 1.90 16 17 N -0.30 -3.45 12.34 30.14 0.37 -3.08 16 18 N -0.48 -3.89 7.45 29.39 0.22 -3.67 16 19 H 0.44 1.87 8.96 -182.36 -1.63 0.23 16 20 C 0.46 4.19 9.54 -89.86 -0.86 3.34 16 21 O -0.44 -2.43 13.63 -17.96 -0.24 -2.68 16 22 N -0.51 -6.42 11.25 -14.97 -0.17 -6.59 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.40 5.52 8.47 -40.82 -0.35 5.17 16 29 H 0.12 1.25 8.14 -51.92 -0.42 0.82 16 30 H 0.12 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.42 -0.09 9.06 45.56 0.41 0.33 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -35.15 299.91 -7.82 -42.97 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -3.65 Total: -0.88 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.05 Total: 1.41 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.82 Total: -50.38 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.16 Total: -13.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.29 Total: -0.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.15 -7.82 -42.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625047617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.703 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds