Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00288 * 2 1 4 4 H 1.48501 * 109.47254 * 239.99902 * 3 2 1 5 5 H 1.48501 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47294 * 120.00056 * 3 2 1 7 7 C 1.37887 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47344 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99723 * 180.02562 * 11 10 9 13 13 O 1.21275 * 120.00274 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99811 * 179.97438 * 12 11 10 15 15 S 1.81398 * 109.47136 * 179.97438 * 14 12 11 16 16 C 1.76199 * 103.00071 * 179.97438 * 15 14 12 17 17 N 1.31156 * 125.55966 * 359.69433 * 16 15 14 18 18 N 1.40415 * 106.90705 * 179.85611 * 17 16 15 19 19 H 0.96997 * 126.76541 * 180.13437 * 18 17 16 20 20 C 1.34766 * 106.47665 * 0.40292 * 18 17 16 21 21 O 1.35423 * 125.97117 * 179.77813 * 20 18 17 22 22 N 1.31412 * 108.06075 * 359.75186 * 20 18 17 23 23 H 0.97002 * 119.99828 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47219 * 59.99382 * 9 7 2 25 25 H 1.09004 * 109.46870 * 299.99967 * 9 7 2 26 26 H 1.09002 * 109.46892 * 59.99717 * 10 9 7 27 27 H 1.09000 * 109.46765 * 299.99773 * 10 9 7 28 28 H 0.96996 * 120.00281 * 359.97438 * 11 10 9 29 29 H 1.08998 * 109.46894 * 59.99918 * 14 12 11 30 30 H 1.09000 * 109.47022 * 299.99473 * 14 12 11 31 31 H 0.96709 * 113.99982 * 269.99548 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1865 -6.0981 0.0003 13 8 3.3992 -6.0981 0.0007 14 6 1.4329 -7.4032 0.0003 15 16 2.6116 -8.7820 0.0001 16 6 1.5642 -10.1989 0.0009 17 7 0.2528 -10.1780 0.0070 18 7 -0.1770 -11.5147 0.0017 19 1 -1.0944 -11.8296 0.0025 20 6 0.9364 -12.2741 0.0015 21 8 0.9759 -13.6278 0.0014 22 7 1.9770 -11.4716 0.0009 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6045 -0.8895 28 1 0.5426 -4.9308 0.0000 29 1 0.8066 -7.4610 -0.8899 30 1 0.8060 -7.4608 0.8901 31 1 0.9875 -14.0211 0.8848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625047617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = -22.246239 kcal Electronic energy + Delta-G solvation = -17122.471730 eV Core-core repulsion = 13952.300852 eV Total energy + Delta-G solvation = -3170.170878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.24864 -40.68229 -38.69829 -36.63275 -34.83883 -33.81145 -32.43920 -31.71658 -30.28118 -26.55927 -24.54920 -23.55188 -22.91518 -21.73170 -20.54684 -18.95414 -18.58109 -18.04891 -17.66718 -17.32341 -16.87147 -16.66850 -16.36085 -15.59167 -15.24356 -15.04037 -14.61698 -14.40685 -14.20331 -13.80583 -13.21107 -12.90023 -12.60226 -12.52886 -12.21280 -11.88959 -11.87558 -11.66668 -11.47367 -11.27388 -11.04866 -11.02844 -10.58557 -10.07020 -8.85626 -8.22639 -6.32575 -0.16211 0.17373 0.81017 1.25380 1.43711 1.44416 1.45517 1.49713 1.53433 2.20428 2.45318 2.92621 3.12482 3.54097 3.69616 3.98588 4.26793 4.49232 4.50710 4.52738 4.78740 4.88705 5.25259 5.49104 5.61035 5.67875 5.80177 6.17753 6.43783 6.50043 6.62215 6.80736 7.14577 7.36608 8.88867 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.066742 B = 0.002607 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.424813 B =10736.871898 C =11127.975578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.140 3.860 11 N -0.707 5.707 12 C 0.529 3.471 13 O -0.571 6.571 14 C -0.142 4.142 15 S 0.080 5.920 16 C 0.201 3.799 17 N -0.311 5.311 18 N -0.463 5.463 19 H 0.460 0.540 20 C 0.477 3.523 21 O -0.436 6.436 22 N -0.548 5.548 23 H 0.265 0.735 24 H 0.010 0.990 25 H 0.011 0.989 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.415 0.585 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 -25.541 1.899 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.017 3.983 11 N -0.358 5.358 12 C 0.314 3.686 13 O -0.452 6.452 14 C -0.293 4.293 15 S 0.306 5.694 16 C -0.189 4.189 17 N -0.150 5.150 18 N -0.197 5.197 19 H 0.310 0.690 20 C 0.160 3.840 21 O -0.241 6.241 22 N -0.290 5.290 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.251 0.749 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -2.184 -24.979 1.327 25.109 hybrid contribution -2.204 0.244 0.447 2.262 sum -4.388 -24.735 1.775 25.184 Atomic orbital electron populations 1.70045 1.07497 1.28021 1.51035 1.25854 0.95783 1.03043 0.94496 0.85524 0.78311 0.78255 0.79128 1.19375 1.20732 1.19354 1.21456 0.93650 0.91947 1.51477 0.92216 1.19144 0.94265 0.91633 0.96539 1.21295 0.95054 0.81675 1.00294 1.45982 1.11365 1.05088 1.73386 1.19942 0.87431 0.85190 0.76059 1.90727 1.15215 1.87729 1.51498 1.23702 1.02239 0.92333 1.11074 1.86718 1.02692 0.87884 1.92085 1.26189 0.93277 0.97908 1.01514 1.78431 1.10665 0.96122 1.29793 1.48132 1.10873 1.03566 1.57126 0.69020 1.21192 0.82505 0.85926 0.94371 1.84864 1.94355 1.07573 1.37281 1.70758 1.29745 0.99833 1.28672 0.92579 0.97162 0.97110 0.93066 0.93129 0.74866 0.83883 0.83702 0.69373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -29.98 9.11 25.60 0.23 -29.75 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.06 5.09 29.85 0.15 1.21 16 10 C 0.14 5.76 5.61 86.38 0.48 6.24 16 11 N -0.71 -22.60 5.56 -463.06 -2.57 -25.17 16 12 C 0.53 16.42 7.85 87.66 0.69 17.11 16 13 O -0.57 -22.43 15.86 -3.01 -0.05 -22.48 16 14 C -0.14 -3.17 6.04 71.24 0.43 -2.74 16 15 S 0.08 2.10 21.30 -56.49 -1.20 0.90 16 16 C 0.20 4.92 8.28 180.46 1.49 6.41 16 17 N -0.31 -6.51 12.34 -58.57 -0.72 -7.23 16 18 N -0.46 -6.39 7.45 -172.64 -1.29 -7.67 16 19 H 0.46 2.59 8.96 -213.12 -1.91 0.68 16 20 C 0.48 7.62 9.54 180.08 1.72 9.34 16 21 O -0.44 -3.64 13.63 -87.18 -1.19 -4.82 16 22 N -0.55 -13.19 11.25 -314.72 -3.54 -16.73 16 23 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 25 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 28 H 0.41 10.94 8.47 -92.71 -0.79 10.15 16 29 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.44 -1.52 9.06 -74.05 -0.67 -2.19 16 Total: -1.00 -75.47 299.91 -4.74 -80.22 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.16 Total: 2.48 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.66 Total: 8.69 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -7.84 Total: -110.17 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.24 Total: -27.30 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.20 Total: 0.90 kcal Total: -75.47 -4.74 -80.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625047617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.972 kcal (2) G-P(sol) polarization free energy of solvation -75.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds