Wall clock time and date at job start Mon Mar 30 2020 00:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36906 * 120.00063 * 2 1 4 4 H 1.08007 * 120.00098 * 173.38712 * 3 2 1 5 5 C 1.39019 * 120.00056 * 353.38193 * 3 2 1 6 6 N 1.31380 * 119.99725 * 5.34004 * 5 3 2 7 7 Si 1.86802 * 119.99829 * 185.34073 * 5 3 2 8 8 H 1.48504 * 109.47048 * 90.00294 * 7 5 3 9 9 H 1.48500 * 109.46912 * 209.99986 * 7 5 3 10 10 H 1.48499 * 109.47358 * 330.00112 * 7 5 3 11 11 C 1.34777 * 119.99957 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00286 * 184.39114 * 11 2 1 13 13 C 1.47329 * 119.99844 * 4.39329 * 11 2 1 14 14 C 1.39845 * 120.19567 * 301.56199 * 13 11 2 15 15 C 1.37910 * 119.91439 * 180.02562 * 14 13 11 16 16 F 1.35099 * 119.83981 * 180.02562 * 15 14 13 17 17 C 1.38798 * 120.31555 * 0.02562 * 15 14 13 18 18 C 1.38059 * 120.39871 * 359.70605 * 17 15 14 19 19 Cl 1.73599 * 119.96272 * 180.27621 * 18 17 15 20 20 C 1.39017 * 120.07731 * 0.55212 * 18 17 15 21 21 N 1.39071 * 120.15566 * 179.74869 * 20 18 17 22 22 H 1.08996 * 109.47275 * 181.75468 * 1 2 3 23 23 H 1.09006 * 109.46863 * 301.75201 * 1 2 3 24 24 H 1.09000 * 109.47822 * 61.74670 * 1 2 3 25 25 H 0.97003 * 119.99755 * 179.97438 * 6 5 3 26 26 H 1.08003 * 120.04004 * 0.02562 * 14 13 11 27 27 H 1.08007 * 119.80162 * 179.97438 * 17 15 14 28 28 H 0.97001 * 119.99660 * 174.41588 * 21 20 18 29 29 H 0.96995 * 120.00240 * 354.41916 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.2242 1.1888 0.1077 5 6 1.4614 2.3856 -0.1388 6 7 0.1478 2.3903 -0.1644 7 14 2.4044 3.9911 -0.2887 8 1 2.6809 4.2708 -1.7207 9 1 1.5946 5.0962 0.2841 10 1 3.6874 3.8826 0.4511 11 6 2.1388 -1.1672 -0.0005 12 8 3.3525 -1.1689 0.0801 13 6 1.4054 -2.4412 -0.0988 14 6 0.4398 -2.7724 0.8570 15 6 -0.2429 -3.9667 0.7597 16 9 -1.1757 -4.2850 1.6836 17 6 0.0238 -4.8432 -0.2830 18 6 0.9704 -4.5268 -1.2368 19 17 1.2899 -5.6282 -2.5401 20 6 1.6722 -3.3298 -1.1517 21 7 2.6298 -3.0118 -2.1087 22 1 -0.3633 -1.0271 0.0315 23 1 -0.3633 0.5408 0.8739 24 1 -0.3635 0.4864 -0.9052 25 1 -0.3323 3.2277 -0.2609 26 1 0.2291 -2.0938 1.6704 27 1 -0.5155 -5.7765 -0.3510 28 1 3.0600 -2.1425 -2.0941 29 1 2.8674 -3.6591 -2.7908 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626161410.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:45 Heat of formation + Delta-G solvation = -44.791805 kcal Electronic energy + Delta-G solvation = -18630.899545 eV Core-core repulsion = 15301.954255 eV Total energy + Delta-G solvation = -3328.945290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.53780 -39.76749 -37.76357 -36.26111 -34.95913 -34.05186 -31.93332 -30.62158 -28.08215 -26.45140 -24.96767 -23.19031 -22.11056 -19.67194 -17.58631 -17.18284 -16.92866 -16.87916 -15.85294 -15.28031 -14.97736 -14.67748 -14.33173 -14.16859 -13.82108 -13.32975 -13.19723 -12.82323 -12.54101 -11.92292 -11.60791 -11.41804 -11.24434 -11.07255 -11.03355 -10.92608 -10.45563 -10.39533 -10.10618 -9.16593 -8.77426 -8.47691 -8.02437 -7.27947 -6.39728 -3.94460 1.12636 1.48851 2.13492 3.06042 3.16818 3.21944 3.48002 3.87686 3.99758 4.03840 4.60980 4.65335 4.99942 5.04771 5.15195 5.43415 5.65984 5.84328 6.05713 6.17556 6.32008 6.40518 6.87916 7.01472 7.31504 7.42385 7.54956 7.88304 7.97308 8.32636 9.02058 9.26938 9.81211 10.52729 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.005737 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.279316 B = 4879.698462 C = 5544.263739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.424 5.424 3 C -0.302 4.302 4 H 0.108 0.892 5 C 0.029 3.971 6 N -0.877 5.877 7 Si 0.935 3.065 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.467 3.533 12 O -0.592 6.592 13 C -0.128 4.128 14 C -0.073 4.073 15 C 0.039 3.961 16 F -0.142 7.142 17 C -0.093 4.093 18 C -0.102 4.102 19 Cl -0.070 7.070 20 C 0.259 3.741 21 N -0.851 5.851 22 H 0.033 0.967 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.269 0.731 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.414 0.586 29 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 -10.374 -2.949 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.140 5.140 3 C -0.430 4.430 4 H 0.126 0.874 5 C -0.174 4.174 6 N -0.517 5.517 7 Si 0.761 3.239 8 H -0.202 1.202 9 H -0.207 1.207 10 H -0.192 1.192 11 C 0.256 3.744 12 O -0.479 6.479 13 C -0.137 4.137 14 C -0.094 4.094 15 C 0.017 3.983 16 F -0.121 7.121 17 C -0.114 4.114 18 C -0.134 4.134 19 Cl -0.042 7.042 20 C 0.147 3.853 21 N -0.389 5.389 22 H 0.051 0.949 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.161 0.839 27 H 0.159 0.841 28 H 0.246 0.754 29 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.054 -10.245 -3.006 10.873 hybrid contribution 0.202 0.727 -0.265 0.800 sum -1.852 -9.518 -3.271 10.233 Atomic orbital electron populations 1.22053 0.79936 0.97313 1.04744 1.43697 1.06371 1.04635 1.59277 1.19881 0.93879 0.81969 1.47277 0.87380 1.25419 0.95815 0.99988 0.96181 1.70177 1.06020 1.27629 1.47851 0.85784 0.79286 0.80123 0.78713 1.20177 1.20735 1.19237 1.17338 0.87099 0.82485 0.87497 1.90643 1.13112 1.86557 1.57633 1.19445 1.00732 0.97666 0.95861 1.21192 0.93991 0.95091 0.99111 1.16936 0.94322 0.95978 0.91036 1.91467 1.63293 1.93034 1.64320 1.20618 0.97789 1.00020 0.92950 1.19763 1.04479 0.93377 0.95747 1.98320 1.95133 1.62346 1.48352 1.17307 0.88542 0.90667 0.88753 1.42517 1.43390 1.21199 1.31778 0.94872 0.91142 0.90807 0.92025 0.83927 0.84139 0.75387 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.29 8.32 59.84 0.50 2.79 15 2 N -0.42 -10.51 3.02 -123.46 -0.37 -10.88 15 3 C -0.30 -8.04 9.56 -15.00 -0.14 -8.18 15 4 H 0.11 3.00 7.18 -52.48 -0.38 2.62 15 5 C 0.03 0.74 5.46 -17.46 -0.10 0.64 15 6 N -0.88 -22.06 9.45 55.50 0.52 -21.53 15 7 Si 0.93 19.89 29.56 -169.99 -5.02 14.86 15 8 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 9 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 11 C 0.47 11.06 6.22 -12.56 -0.08 10.99 15 12 O -0.59 -15.66 15.85 5.24 0.08 -15.58 15 13 C -0.13 -2.51 4.82 -104.81 -0.50 -3.01 15 14 C -0.07 -1.28 7.40 -39.10 -0.29 -1.57 15 15 C 0.04 0.61 7.28 -39.49 -0.29 0.32 15 16 F -0.14 -2.18 17.26 2.25 0.04 -2.14 15 17 C -0.09 -1.32 9.78 -39.44 -0.39 -1.71 15 18 C -0.10 -1.52 6.33 -39.36 -0.25 -1.77 15 19 Cl -0.07 -0.87 27.59 -51.86 -1.43 -2.30 15 20 C 0.26 4.47 6.76 -83.50 -0.56 3.91 15 21 N -0.85 -13.59 8.89 32.59 0.29 -13.30 15 22 H 0.03 0.65 4.47 -51.93 -0.23 0.41 15 23 H 0.07 1.64 7.19 -51.93 -0.37 1.27 15 24 H 0.07 1.74 6.90 -51.93 -0.36 1.39 15 25 H 0.27 6.42 8.31 -40.82 -0.34 6.08 15 26 H 0.14 2.45 7.63 -52.48 -0.40 2.05 15 27 H 0.14 1.63 8.06 -52.48 -0.42 1.21 15 28 H 0.41 7.35 7.15 -40.82 -0.29 7.05 15 29 H 0.40 5.24 7.51 -40.82 -0.31 4.94 15 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -27.82 269.26 -5.83 -33.65 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -1.90 Total: 10.77 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.10 Total: 2.40 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.44 Total: -45.72 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.08 Total: -15.58 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.43 Total: -2.30 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.82 -5.83 -33.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626161410.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.144 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds