Wall clock time and date at job start Mon Mar 30 2020 00:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36906 * 120.00063 * 2 1 4 4 H 1.08007 * 120.00098 * 173.38712 * 3 2 1 5 5 C 1.39019 * 120.00056 * 353.38193 * 3 2 1 6 6 N 1.31380 * 119.99725 * 5.34004 * 5 3 2 7 7 Si 1.86802 * 119.99829 * 185.34073 * 5 3 2 8 8 H 1.48504 * 109.47048 * 90.00294 * 7 5 3 9 9 H 1.48500 * 109.46912 * 209.99986 * 7 5 3 10 10 H 1.48499 * 109.47358 * 330.00112 * 7 5 3 11 11 C 1.34777 * 119.99957 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00286 * 184.39114 * 11 2 1 13 13 C 1.47329 * 119.99844 * 4.39329 * 11 2 1 14 14 C 1.39845 * 120.19567 * 301.56199 * 13 11 2 15 15 C 1.37910 * 119.91439 * 180.02562 * 14 13 11 16 16 F 1.35099 * 119.83981 * 180.02562 * 15 14 13 17 17 C 1.38798 * 120.31555 * 0.02562 * 15 14 13 18 18 C 1.38059 * 120.39871 * 359.70605 * 17 15 14 19 19 Cl 1.73599 * 119.96272 * 180.27621 * 18 17 15 20 20 C 1.39017 * 120.07731 * 0.55212 * 18 17 15 21 21 N 1.39071 * 120.15566 * 179.74869 * 20 18 17 22 22 H 1.08996 * 109.47275 * 181.75468 * 1 2 3 23 23 H 1.09006 * 109.46863 * 301.75201 * 1 2 3 24 24 H 1.09000 * 109.47822 * 61.74670 * 1 2 3 25 25 H 0.97003 * 119.99755 * 179.97438 * 6 5 3 26 26 H 1.08003 * 120.04004 * 0.02562 * 14 13 11 27 27 H 1.08007 * 119.80162 * 179.97438 * 17 15 14 28 28 H 0.97001 * 119.99660 * 174.41588 * 21 20 18 29 29 H 0.96995 * 120.00240 * 354.41916 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.2242 1.1888 0.1077 5 6 1.4614 2.3856 -0.1388 6 7 0.1478 2.3903 -0.1644 7 14 2.4044 3.9911 -0.2887 8 1 2.6809 4.2708 -1.7207 9 1 1.5946 5.0962 0.2841 10 1 3.6874 3.8826 0.4511 11 6 2.1388 -1.1672 -0.0005 12 8 3.3525 -1.1689 0.0801 13 6 1.4054 -2.4412 -0.0988 14 6 0.4398 -2.7724 0.8570 15 6 -0.2429 -3.9667 0.7597 16 9 -1.1757 -4.2850 1.6836 17 6 0.0238 -4.8432 -0.2830 18 6 0.9704 -4.5268 -1.2368 19 17 1.2899 -5.6282 -2.5401 20 6 1.6722 -3.3298 -1.1517 21 7 2.6298 -3.0118 -2.1087 22 1 -0.3633 -1.0271 0.0315 23 1 -0.3633 0.5408 0.8739 24 1 -0.3635 0.4864 -0.9052 25 1 -0.3323 3.2277 -0.2609 26 1 0.2291 -2.0938 1.6704 27 1 -0.5155 -5.7765 -0.3510 28 1 3.0600 -2.1425 -2.0941 29 1 2.8674 -3.6591 -2.7908 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626161410.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:44 Heat of formation + Delta-G solvation = -62.043756 kcal Electronic energy + Delta-G solvation = -18631.647646 eV Core-core repulsion = 15301.954255 eV Total energy + Delta-G solvation = -3329.693391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.77048 -41.30205 -39.36114 -37.43249 -36.81046 -35.42658 -33.76779 -32.08880 -29.41274 -28.30752 -26.71741 -24.71697 -23.45543 -21.28624 -19.17471 -18.75567 -18.49000 -18.23713 -17.49577 -16.56119 -16.40497 -16.18477 -15.96353 -15.77698 -15.48333 -14.66078 -14.52837 -14.28738 -14.12692 -13.67973 -13.35899 -12.87212 -12.79104 -12.63157 -12.54781 -12.27252 -12.13355 -12.10364 -11.43352 -11.06796 -10.55375 -9.97160 -9.90333 -8.58599 -8.29918 -5.95220 -0.18871 0.18773 0.95381 1.36077 1.41656 1.53914 1.87232 2.21493 2.42878 2.72298 2.97270 3.07536 3.37035 3.63291 3.83182 3.99027 4.36127 4.45945 4.61471 4.74854 4.88314 5.00010 5.15994 5.40589 5.46451 5.60965 5.97062 6.20692 6.40619 6.69114 7.08492 7.38744 7.92695 8.60769 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.005737 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.279316 B = 4879.698462 C = 5544.263739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.441 5.441 3 C -0.342 4.342 4 H 0.085 0.915 5 C -0.001 4.001 6 N -0.890 5.890 7 Si 0.996 3.004 8 H -0.270 1.270 9 H -0.270 1.270 10 H -0.273 1.273 11 C 0.472 3.528 12 O -0.628 6.628 13 C -0.160 4.160 14 C -0.076 4.076 15 C 0.042 3.958 16 F -0.137 7.137 17 C -0.070 4.070 18 C -0.098 4.098 19 Cl -0.041 7.041 20 C 0.254 3.746 21 N -0.847 5.847 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.274 0.726 26 H 0.138 0.862 27 H 0.176 0.824 28 H 0.405 0.595 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -11.887 -3.603 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.156 5.156 3 C -0.470 4.470 4 H 0.103 0.897 5 C -0.203 4.203 6 N -0.529 5.529 7 Si 0.819 3.181 8 H -0.195 1.195 9 H -0.195 1.195 10 H -0.197 1.197 11 C 0.261 3.739 12 O -0.518 6.518 13 C -0.169 4.169 14 C -0.096 4.096 15 C 0.020 3.980 16 F -0.116 7.116 17 C -0.090 4.090 18 C -0.130 4.130 19 Cl -0.012 7.012 20 C 0.142 3.858 21 N -0.385 5.385 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.156 0.844 27 H 0.194 0.806 28 H 0.235 0.765 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.051 -11.791 -3.674 12.722 hybrid contribution 0.488 1.021 -0.094 1.135 sum -2.562 -10.771 -3.768 11.695 Atomic orbital electron populations 1.21859 0.78799 0.98593 1.03099 1.43863 1.07138 1.04651 1.59959 1.19832 0.93299 0.83642 1.50180 0.89739 1.26139 0.96737 1.02317 0.95148 1.70263 1.06720 1.28573 1.47359 0.84885 0.77903 0.76506 0.78772 1.19521 1.19486 1.19741 1.17941 0.86890 0.83556 0.85474 1.90593 1.14980 1.87497 1.58703 1.19059 1.02742 0.96681 0.98444 1.21129 0.93834 0.96082 0.98585 1.16856 0.94110 0.95482 0.91505 1.91486 1.63007 1.92872 1.64265 1.20973 0.96412 1.00471 0.91144 1.19806 1.03715 0.92909 0.96569 1.98339 1.94982 1.60992 1.46913 1.17419 0.88885 0.91162 0.88372 1.42509 1.43009 1.21056 1.31922 0.92110 0.92619 0.92410 0.91543 0.84373 0.80623 0.76509 0.75759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.43 8.32 127.77 1.06 6.50 15 2 N -0.44 -22.57 3.02 -662.75 -2.00 -24.58 15 3 C -0.34 -18.90 9.56 84.09 0.80 -18.10 15 4 H 0.08 4.95 7.18 -2.91 -0.02 4.93 15 5 C 0.00 -0.07 5.46 84.95 0.46 0.39 15 6 N -0.89 -45.23 9.45 21.68 0.20 -45.03 15 7 Si 1.00 41.14 29.56 68.60 2.03 43.17 15 8 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 9 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 11 C 0.47 23.01 6.22 86.64 0.54 23.55 15 12 O -0.63 -34.56 15.85 -4.16 -0.07 -34.63 15 13 C -0.16 -6.25 4.82 -19.99 -0.10 -6.35 15 14 C -0.08 -2.59 7.40 22.58 0.17 -2.42 15 15 C 0.04 1.21 7.28 22.33 0.16 1.37 15 16 F -0.14 -3.82 17.26 44.97 0.78 -3.04 15 17 C -0.07 -1.72 9.78 22.36 0.22 -1.50 15 18 C -0.10 -2.64 6.33 22.41 0.14 -2.50 15 19 Cl -0.04 -0.88 27.59 -2.72 -0.08 -0.96 15 20 C 0.25 8.45 6.76 38.69 0.26 8.71 15 21 N -0.85 -26.53 8.89 -50.79 -0.45 -26.99 15 22 H 0.06 2.38 4.47 -2.39 -0.01 2.37 15 23 H 0.06 2.66 7.19 -2.38 -0.02 2.64 15 24 H 0.06 2.78 6.90 -2.39 -0.02 2.77 15 25 H 0.27 13.03 8.31 -92.71 -0.77 12.26 15 26 H 0.14 4.75 7.63 -2.91 -0.02 4.73 15 27 H 0.18 3.12 8.06 -2.91 -0.02 3.10 15 28 H 0.40 14.60 7.15 -92.71 -0.66 13.94 15 29 H 0.41 10.24 7.51 -92.71 -0.70 9.55 15 Total: -1.00 -60.80 269.26 4.02 -56.78 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.12 Total: 25.61 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 3.73 Total: 9.66 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -2.25 Total: -96.59 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.07 Total: -34.63 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -60.80 4.02 -56.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626161410.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.265 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds