Wall clock time and date at job start Mon Mar 30 2020 01:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47195 * 107.86513 * 3 2 1 5 5 C 1.37095 * 120.00138 * 263.94882 * 4 3 2 6 6 H 1.07998 * 120.00803 * 200.21351 * 5 4 3 7 7 C 1.38951 * 119.99906 * 20.21697 * 5 4 3 8 8 N 1.31417 * 119.99985 * 21.43369 * 7 5 4 9 9 Si 1.86805 * 120.00308 * 201.43654 * 7 5 4 10 10 H 1.48507 * 109.46913 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47342 * 119.99680 * 9 7 5 12 12 H 1.48503 * 109.47091 * 240.00024 * 9 7 5 13 13 C 1.34784 * 120.00260 * 83.95101 * 4 3 2 14 14 O 1.21292 * 120.00012 * 179.97438 * 13 4 3 15 15 C 1.50694 * 119.99626 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.46986 * 180.02562 * 15 13 4 17 17 C 1.53048 * 113.14708 * 275.37032 * 16 15 13 18 18 S 1.81426 * 89.88936 * 211.85362 * 17 16 15 19 19 O 1.42098 * 112.75287 * 280.47407 * 18 17 16 20 20 O 1.42099 * 112.75550 * 136.72979 * 18 17 16 21 21 C 1.53043 * 113.15351 * 174.99986 * 16 15 13 22 22 H 1.09000 * 109.47492 * 347.86170 * 3 2 1 23 23 H 1.09006 * 109.47319 * 227.86362 * 3 2 1 24 24 H 0.97002 * 119.99837 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.47796 * 59.99825 * 15 13 4 26 26 H 1.09006 * 109.47311 * 299.99590 * 15 13 4 27 27 H 1.08990 * 112.52904 * 45.17738 * 16 15 13 28 28 H 1.09001 * 113.14630 * 327.11415 * 17 16 15 29 29 H 1.09000 * 113.14953 * 96.59435 * 17 16 15 30 30 H 1.08998 * 113.14411 * 263.40241 * 21 16 15 31 31 H 1.08998 * 113.14631 * 32.87959 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.4246 -1.3146 5 6 3.4431 -0.5135 -2.2522 6 1 4.0921 -0.2434 -3.0720 7 6 2.9595 -1.8120 -2.1478 8 7 1.8768 -2.0553 -1.4438 9 14 3.8483 -3.2118 -3.0081 10 1 5.0309 -2.6775 -3.7303 11 1 4.2916 -4.2095 -2.0016 12 1 2.9288 -3.8608 -3.9769 13 6 3.2042 1.7369 -1.6023 14 8 3.6088 2.0879 -2.6906 15 6 2.8235 2.7681 -0.5715 16 6 3.0380 4.1690 -1.1480 17 6 4.4782 4.6658 -1.0015 18 16 3.8713 6.3685 -0.8467 19 8 3.5436 6.9513 -2.1006 20 8 4.5288 7.0950 0.1825 21 6 2.5622 5.2837 -0.2135 22 1 2.9718 -1.0038 0.2161 23 1 2.9711 0.6903 0.7621 24 1 1.5394 -2.9618 -1.3707 25 1 3.4436 2.6411 0.3159 26 1 1.7745 2.6430 -0.3026 27 1 2.6523 4.2665 -2.1627 28 1 4.9673 4.3014 -0.0981 29 1 5.0801 4.5051 -1.8959 30 1 1.5593 5.6404 -0.4480 31 1 2.6820 5.0384 0.8417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632144978.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:01 Heat of formation + Delta-G solvation = -70.543377 kcal Electronic energy + Delta-G solvation = -18796.284108 eV Core-core repulsion = 15591.726157 eV Total energy + Delta-G solvation = -3204.557951 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.73203 -38.38669 -37.99196 -37.28261 -36.93547 -36.05921 -33.75881 -30.31154 -28.99783 -27.41341 -26.41659 -22.39118 -20.57744 -19.70193 -19.67923 -18.22524 -17.89599 -17.31254 -17.23167 -16.98753 -16.50014 -15.97155 -15.75410 -15.32509 -14.67113 -14.31550 -14.03134 -13.88193 -13.72892 -13.45915 -13.23418 -13.20431 -13.15850 -13.08467 -12.87971 -12.34273 -12.26959 -12.11997 -12.02238 -11.83635 -11.44234 -11.12086 -11.09516 -10.34992 -9.87216 -8.39487 -5.95535 -0.68101 1.19116 1.38574 1.48827 1.60316 1.86427 2.11310 2.29276 2.37456 2.83569 3.01634 3.07094 3.22880 3.46650 3.63599 3.79871 4.06180 4.20408 4.38001 4.47392 4.56860 4.74784 4.80009 4.88963 4.93262 5.08419 5.25985 5.50462 6.08319 6.42750 7.05500 7.16314 7.40101 7.97566 8.64537 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.004816 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.565219 B = 5813.003646 C = 6376.365499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.257 3.743 3 C 0.220 3.780 4 N -0.460 5.460 5 C -0.338 4.338 6 H 0.080 0.920 7 C 0.005 3.995 8 N -0.893 5.893 9 Si 0.982 3.018 10 H -0.272 1.272 11 H -0.263 1.263 12 H -0.292 1.292 13 C 0.448 3.552 14 O -0.614 6.614 15 C -0.109 4.109 16 C -0.067 4.067 17 C -0.587 4.587 18 S 2.435 3.565 19 O -0.960 6.960 20 O -0.956 6.956 21 C -0.572 4.572 22 H 0.119 0.881 23 H 0.148 0.852 24 H 0.273 0.727 25 H 0.136 0.864 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.170 0.830 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 9.471 8.941 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.060 4.060 3 C 0.094 3.906 4 N -0.180 5.180 5 C -0.466 4.466 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.532 5.532 9 Si 0.807 3.193 10 H -0.196 1.196 11 H -0.188 1.188 12 H -0.219 1.219 13 C 0.239 3.761 14 O -0.500 6.500 15 C -0.150 4.150 16 C -0.088 4.088 17 C -0.716 4.716 18 S 2.620 3.380 19 O -0.957 6.957 20 O -0.953 6.953 21 C -0.703 4.703 22 H 0.136 0.864 23 H 0.165 0.835 24 H 0.083 0.917 25 H 0.154 0.846 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.188 0.812 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.647 10.673 8.253 13.976 hybrid contribution 0.127 -2.299 -0.930 2.483 sum 3.773 8.374 7.323 11.747 Atomic orbital electron populations 1.80912 1.14882 1.12804 1.10475 1.29808 0.95867 0.89609 0.90732 1.19090 0.80009 1.05163 0.86365 1.43833 1.56998 1.04753 1.12408 1.19592 1.28471 0.89869 1.08658 0.90229 1.25844 0.95041 1.00544 0.98247 1.69926 1.18669 1.22242 1.42386 0.85045 0.78138 0.78030 0.78096 1.19610 1.18805 1.21857 1.21207 0.81958 0.83610 0.89329 1.90521 1.51595 1.80688 1.27147 1.21540 1.04261 0.90781 0.98428 1.21159 0.93398 0.94755 0.99481 1.31072 1.04954 1.23225 1.12345 1.07487 0.79864 0.76410 0.74201 1.93650 1.82629 1.76915 1.42512 1.93583 1.72315 1.72198 1.57211 1.30937 1.18355 1.09787 1.11208 0.86362 0.83512 0.91744 0.84623 0.88614 0.88894 0.81221 0.86626 0.84220 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.65 18.54 20.00 0.37 -22.28 16 2 C 0.26 10.28 12.82 89.44 1.15 11.43 16 3 C 0.22 7.51 4.91 84.57 0.42 7.93 16 4 N -0.46 -19.66 2.60 -645.43 -1.68 -21.34 16 5 C -0.34 -16.88 9.27 84.04 0.78 -16.10 16 6 H 0.08 4.34 7.43 -2.91 -0.02 4.32 16 7 C 0.01 0.25 4.84 84.93 0.41 0.66 16 8 N -0.89 -43.56 9.58 21.66 0.21 -43.35 16 9 Si 0.98 39.19 29.60 68.60 2.03 41.22 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 12 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.45 18.13 7.56 87.65 0.66 18.80 16 14 O -0.61 -30.19 15.45 -3.07 -0.05 -30.24 16 15 C -0.11 -2.84 4.08 29.85 0.12 -2.72 16 16 C -0.07 -1.56 2.80 -10.76 -0.03 -1.59 16 17 C -0.59 -11.18 7.49 72.00 0.54 -10.64 16 18 S 2.43 43.37 7.55 -56.49 -0.43 42.95 16 19 O -0.96 -25.69 18.18 -127.88 -2.32 -28.02 16 20 O -0.96 -21.30 18.18 -127.88 -2.32 -23.63 16 21 C -0.57 -7.98 7.49 72.00 0.54 -7.44 16 22 H 0.12 4.23 6.63 -2.39 -0.02 4.22 16 23 H 0.15 3.12 6.69 -2.38 -0.02 3.11 16 24 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 25 H 0.14 2.28 7.17 -2.39 -0.02 2.26 16 26 H 0.10 2.42 7.49 -2.38 -0.02 2.40 16 27 H 0.09 2.71 7.71 -2.39 -0.02 2.69 16 28 H 0.17 2.18 7.94 -2.39 -0.02 2.16 16 29 H 0.12 2.58 8.14 -2.39 -0.02 2.57 16 30 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.18 1.34 8.12 -2.39 -0.02 1.32 16 Total: -1.00 -77.82 286.04 1.56 -76.26 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.17 Total: 8.10 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 4.59 Total: 0.32 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -1.10 Total: -86.97 kcal Atomic # 8 Polarization: -77.18 SS G_CDS: -4.70 Total: -81.88 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 43.37 SS G_CDS: -0.43 Total: 42.95 kcal Total: -77.82 1.56 -76.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632144978.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.714 kcal (2) G-P(sol) polarization free energy of solvation -77.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds