Wall clock time and date at job start Mon Mar 30 2020 01:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 119.99636 * 2 1 4 4 H 1.48498 * 109.47144 * 269.99799 * 3 2 1 5 5 H 1.48501 * 109.47355 * 30.00199 * 3 2 1 6 6 H 1.48500 * 109.46761 * 150.00005 * 3 2 1 7 7 C 1.38791 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00284 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99898 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00167 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47199 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00167 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00311 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47745 * 180.02562 * 14 13 11 16 16 N 1.30834 * 125.95659 * 275.02647 * 15 14 13 17 17 C 1.33241 * 109.82716 * 179.97438 * 16 15 14 18 18 C 1.50701 * 125.52704 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47009 * 90.00429 * 18 17 16 20 20 N 1.30718 * 108.94820 * 359.97438 * 17 16 15 21 21 N 1.34428 * 125.96307 * 94.99803 * 15 14 13 22 22 H 0.96998 * 126.82131 * 0.02562 * 21 15 14 23 23 H 0.97002 * 120.00211 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47215 * 59.99464 * 10 9 7 25 25 H 1.09001 * 109.46741 * 300.00136 * 10 9 7 26 26 H 0.97005 * 120.00147 * 359.97438 * 13 11 10 27 27 H 1.09002 * 109.47047 * 59.99381 * 14 13 11 28 28 H 1.09007 * 109.46754 * 300.00510 * 14 13 11 29 29 H 1.08999 * 109.46976 * 209.99632 * 18 17 16 30 30 H 1.08988 * 109.47287 * 330.00039 * 18 17 16 31 31 H 0.96703 * 114.00037 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0025 11 6 5.5731 -3.2323 -0.0026 12 8 6.3441 -2.2962 -0.0024 13 7 6.0458 -4.4945 -0.0030 14 6 7.4908 -4.7356 -0.0037 15 6 7.7525 -6.2197 -0.0047 16 7 7.7950 -6.9929 1.0498 17 6 8.0486 -8.2477 0.6802 18 6 8.1740 -9.4264 1.6108 19 8 6.8917 -10.0318 1.7881 20 7 8.1711 -8.2905 -0.6205 21 7 7.9826 -6.9800 -1.0891 22 1 8.0123 -6.6826 -2.0119 23 1 -0.4850 0.8400 -0.0004 24 1 3.6434 -3.4309 -0.8926 25 1 3.6441 -3.4320 0.8873 26 1 5.4292 -5.2434 -0.0029 27 1 7.9341 -4.2886 0.8861 28 1 7.9333 -4.2883 -0.8939 29 1 8.8636 -10.1546 1.1839 30 1 8.5530 -9.0891 2.5754 31 1 6.8969 -10.7987 2.3771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641004189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:36 Heat of formation + Delta-G solvation = 2.190683 kcal Electronic energy + Delta-G solvation = -17389.367014 eV Core-core repulsion = 14220.255800 eV Total energy + Delta-G solvation = -3169.111214 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.65320 -39.38733 -37.27913 -35.13267 -33.13196 -32.45726 -32.08375 -29.86932 -27.67631 -26.59420 -25.60094 -21.94677 -20.96593 -20.70675 -18.60263 -18.02198 -17.84015 -16.64170 -16.47350 -15.59709 -15.42931 -15.17166 -14.98494 -14.79751 -13.97938 -13.86243 -13.58430 -13.24724 -12.81399 -12.49691 -12.44840 -11.98560 -11.29049 -11.02472 -10.69861 -10.66111 -10.61726 -10.43076 -10.26185 -9.87121 -9.63431 -9.25882 -9.01766 -8.54116 -6.94901 -6.30367 -4.02910 0.97742 2.08800 2.16042 2.76287 2.81875 3.25892 3.31664 3.37421 3.48896 3.62495 3.96271 4.20649 4.31352 4.44982 4.67545 4.83008 4.85336 5.08613 5.10318 5.23840 5.38614 5.70031 5.72026 5.86379 5.97083 6.19974 6.53050 7.14123 7.37158 7.59810 7.92611 8.29523 8.40575 9.15459 10.78882 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.039072 B = 0.003140 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.454152 B = 8914.893377 C = 9339.983752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.139 6.139 10 C -0.124 4.124 11 C 0.537 3.463 12 O -0.514 6.514 13 N -0.733 5.733 14 C 0.203 3.797 15 C 0.274 3.726 16 N -0.509 5.509 17 C 0.224 3.776 18 C 0.173 3.827 19 O -0.564 6.564 20 N -0.289 5.289 21 N -0.467 5.467 22 H 0.445 0.555 23 H 0.271 0.729 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.405 0.595 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.384 -17.969 0.557 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.324 3.676 12 O -0.388 6.388 13 N -0.390 5.390 14 C 0.076 3.924 15 C -0.006 4.006 16 N -0.239 5.239 17 C -0.059 4.059 18 C 0.093 3.907 19 O -0.369 6.369 20 N -0.120 5.120 21 N -0.187 5.187 22 H 0.292 0.708 23 H 0.081 0.919 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.239 0.761 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 18.430 -16.413 0.168 24.680 hybrid contribution -0.934 -0.825 -0.356 1.296 sum 17.496 -17.239 -0.188 24.562 Atomic orbital electron populations 1.69939 1.05933 1.27809 1.47958 1.24717 0.94456 0.98988 0.93158 0.86731 0.81912 0.83266 0.79915 1.19216 1.19916 1.15868 1.22310 0.88179 0.97587 1.58903 0.89329 1.84773 1.09430 0.99645 1.97453 1.23274 0.93353 1.04675 1.06147 1.20309 0.90842 0.81597 0.74895 1.90721 1.58661 1.41942 1.47463 1.45907 1.05923 1.08824 1.78379 1.19619 0.83932 0.83341 1.05521 1.24313 0.97081 0.96226 0.82948 1.70394 1.22502 1.01510 1.29451 1.23882 0.98677 0.93382 0.89971 1.20032 0.85961 0.88924 0.95769 1.86519 1.29354 1.49475 1.71579 1.78017 1.24803 0.96882 1.12332 1.48076 1.54225 1.05599 1.10750 0.70797 0.91901 0.88311 0.88099 0.76100 0.87355 0.88819 0.90878 0.90245 0.76143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.53 27.74 -169.99 -4.71 16.81 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.23 -5.86 6.74 56.52 0.38 -5.48 16 7 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 10 C -0.12 -2.31 6.16 36.00 0.22 -2.09 16 11 C 0.54 8.88 7.85 -10.99 -0.09 8.80 16 12 O -0.51 -10.24 15.86 5.56 0.09 -10.15 16 13 N -0.73 -8.76 5.55 -61.48 -0.34 -9.10 16 14 C 0.20 2.02 6.30 -5.20 -0.03 1.99 16 15 C 0.27 2.79 7.60 -155.70 -1.18 1.61 16 16 N -0.51 -6.21 11.19 -8.16 -0.09 -6.30 16 17 C 0.22 2.54 7.77 -156.85 -1.22 1.32 16 18 C 0.17 1.34 7.67 36.01 0.28 1.61 16 19 O -0.56 -4.76 13.64 -35.23 -0.48 -5.24 16 20 N -0.29 -3.25 12.80 32.42 0.41 -2.84 16 21 N -0.47 -4.19 7.45 32.62 0.24 -3.95 16 22 H 0.45 2.54 8.96 -182.33 -1.63 0.90 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 25 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 26 H 0.40 4.26 8.46 -40.82 -0.35 3.91 16 27 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.48 8.14 -51.94 -0.42 0.06 16 31 H 0.39 1.06 9.12 45.56 0.42 1.47 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -37.41 298.31 -7.09 -44.50 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -3.68 Total: 1.53 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.81 Total: 1.34 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 1.00 Total: -47.86 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.39 Total: -15.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -37.41 -7.09 -44.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641004189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.695 kcal (2) G-P(sol) polarization free energy of solvation -37.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds