Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 119.99636 * 2 1 4 4 H 1.48498 * 109.47144 * 269.99799 * 3 2 1 5 5 H 1.48501 * 109.47355 * 30.00199 * 3 2 1 6 6 H 1.48500 * 109.46761 * 150.00005 * 3 2 1 7 7 C 1.38791 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00284 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99898 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00167 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47199 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00167 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00311 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47745 * 180.02562 * 14 13 11 16 16 N 1.30834 * 125.95659 * 275.02647 * 15 14 13 17 17 C 1.33241 * 109.82716 * 179.97438 * 16 15 14 18 18 C 1.50701 * 125.52704 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47009 * 90.00429 * 18 17 16 20 20 N 1.30718 * 108.94820 * 359.97438 * 17 16 15 21 21 N 1.34428 * 125.96307 * 94.99803 * 15 14 13 22 22 H 0.96998 * 126.82131 * 0.02562 * 21 15 14 23 23 H 0.97002 * 120.00211 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47215 * 59.99464 * 10 9 7 25 25 H 1.09001 * 109.46741 * 300.00136 * 10 9 7 26 26 H 0.97005 * 120.00147 * 359.97438 * 13 11 10 27 27 H 1.09002 * 109.47047 * 59.99381 * 14 13 11 28 28 H 1.09007 * 109.46754 * 300.00510 * 14 13 11 29 29 H 1.08999 * 109.46976 * 209.99632 * 18 17 16 30 30 H 1.08988 * 109.47287 * 330.00039 * 18 17 16 31 31 H 0.96703 * 114.00037 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0025 11 6 5.5731 -3.2323 -0.0026 12 8 6.3441 -2.2962 -0.0024 13 7 6.0458 -4.4945 -0.0030 14 6 7.4908 -4.7356 -0.0037 15 6 7.7525 -6.2197 -0.0047 16 7 7.7950 -6.9929 1.0498 17 6 8.0486 -8.2477 0.6802 18 6 8.1740 -9.4264 1.6108 19 8 6.8917 -10.0318 1.7881 20 7 8.1711 -8.2905 -0.6205 21 7 7.9826 -6.9800 -1.0891 22 1 8.0123 -6.6826 -2.0119 23 1 -0.4850 0.8400 -0.0004 24 1 3.6434 -3.4309 -0.8926 25 1 3.6441 -3.4320 0.8873 26 1 5.4292 -5.2434 -0.0029 27 1 7.9341 -4.2886 0.8861 28 1 7.9333 -4.2883 -0.8939 29 1 8.8636 -10.1546 1.1839 30 1 8.5530 -9.0891 2.5754 31 1 6.8969 -10.7987 2.3771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641004189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = -30.216363 kcal Electronic energy + Delta-G solvation = -17390.772289 eV Core-core repulsion = 14220.255800 eV Total energy + Delta-G solvation = -3170.516489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.43921 -40.68068 -37.85327 -36.22263 -34.66409 -33.91044 -33.03809 -31.16380 -28.44017 -27.89093 -27.42162 -22.75181 -21.96837 -21.71950 -20.01482 -19.19670 -18.58858 -17.97605 -17.58451 -17.06990 -16.74612 -16.40167 -15.90611 -15.66688 -15.43556 -14.99350 -14.88327 -14.72646 -14.24945 -13.56704 -13.32925 -13.19538 -13.02394 -12.97013 -12.66132 -11.86142 -11.41402 -11.39042 -11.28585 -11.15942 -11.05911 -10.82320 -10.53705 -10.34396 -8.98278 -8.50544 -6.21504 0.17224 0.97934 1.33296 1.34256 1.39940 1.49406 1.50312 1.62924 2.25047 2.29525 2.63542 2.71523 2.87881 3.29105 3.48797 3.79418 3.93672 4.17409 4.25635 4.35276 4.47397 4.49139 4.58521 4.95424 5.10210 5.12628 5.71456 5.90740 6.12703 6.25485 6.81789 6.86773 6.94383 7.03920 8.62009 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.039072 B = 0.003140 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.454152 B = 8914.893377 C = 9339.983752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.044 3.956 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.233 1.233 7 C -0.531 4.531 8 H 0.061 0.939 9 S -0.167 6.167 10 C -0.114 4.114 11 C 0.547 3.453 12 O -0.549 6.549 13 N -0.712 5.712 14 C 0.206 3.794 15 C 0.277 3.723 16 N -0.536 5.536 17 C 0.209 3.791 18 C 0.171 3.829 19 O -0.589 6.589 20 N -0.306 5.306 21 N -0.454 5.454 22 H 0.459 0.541 23 H 0.277 0.723 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.414 0.586 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.984 -18.651 0.407 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.162 4.162 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.157 1.157 7 C -0.678 4.678 8 H 0.079 0.921 9 S 0.060 5.940 10 C -0.265 4.265 11 C 0.333 3.667 12 O -0.426 6.426 13 N -0.367 5.367 14 C 0.080 3.920 15 C -0.003 4.003 16 N -0.267 5.267 17 C -0.074 4.074 18 C 0.092 3.908 19 O -0.398 6.398 20 N -0.138 5.138 21 N -0.175 5.175 22 H 0.309 0.691 23 H 0.086 0.914 24 H 0.134 0.866 25 H 0.130 0.870 26 H 0.250 0.750 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 20.035 -17.159 0.010 26.379 hybrid contribution -1.405 -0.820 -0.316 1.657 sum 18.630 -17.979 -0.305 25.893 Atomic orbital electron populations 1.70025 1.07441 1.29062 1.49187 1.25606 0.95281 1.02420 0.92855 0.85841 0.80741 0.79362 0.80275 1.18570 1.18554 1.15714 1.22482 0.90460 0.96644 1.58252 0.92112 1.84628 1.06168 1.05640 1.97590 1.23266 0.95643 0.99964 1.07621 1.19780 0.89432 0.82528 0.74960 1.90718 1.58985 1.43295 1.49645 1.45613 1.07311 1.07472 1.76349 1.19728 0.82209 0.83382 1.06649 1.24175 0.97040 0.96005 0.83050 1.70386 1.23409 1.02269 1.30586 1.24574 0.98247 0.94064 0.90465 1.20241 0.86089 0.88511 0.96006 1.86447 1.29985 1.50830 1.72567 1.77977 1.25344 0.97843 1.12637 1.48013 1.53293 1.04877 1.11322 0.69136 0.91379 0.86628 0.86959 0.74955 0.87539 0.86502 0.88713 0.88874 0.73601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16 2 C 0.04 2.54 5.50 84.86 0.47 3.01 16 3 Si 0.92 44.31 27.74 68.60 1.90 46.21 16 4 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.23 -11.16 6.74 99.48 0.67 -10.49 16 7 C -0.53 -30.53 10.04 67.95 0.68 -29.85 16 8 H 0.06 3.71 8.03 -2.91 -0.02 3.68 16 9 S -0.17 -8.14 18.55 -56.49 -1.05 -9.19 16 10 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 11 C 0.55 17.02 7.85 87.66 0.69 17.70 16 12 O -0.55 -20.98 15.86 -3.01 -0.05 -21.03 16 13 N -0.71 -15.27 5.55 -466.80 -2.59 -17.86 16 14 C 0.21 3.61 6.30 85.63 0.54 4.14 16 15 C 0.28 5.07 7.60 138.22 1.05 6.12 16 16 N -0.54 -12.21 11.19 -179.73 -2.01 -14.22 16 17 C 0.21 4.42 7.77 138.63 1.08 5.50 16 18 C 0.17 2.35 7.67 71.24 0.55 2.89 16 19 O -0.59 -9.03 13.64 -148.98 -2.03 -11.06 16 20 N -0.31 -6.38 12.80 -51.33 -0.66 -7.04 16 21 N -0.45 -7.19 7.45 -50.71 -0.38 -7.57 16 22 H 0.46 4.15 8.96 -213.10 -1.91 2.24 16 23 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 24 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 25 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 26 H 0.41 7.63 8.46 -92.70 -0.78 6.85 16 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.41 1.56 9.12 -74.06 -0.68 0.88 16 Total: -1.00 -80.17 298.31 -3.27 -83.43 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -2.20 Total: 8.01 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.49 Total: 5.88 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -5.33 Total: -102.25 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -2.08 Total: -32.09 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.05 Total: -9.19 kcal Total: -80.17 -3.27 -83.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641004189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.217 kcal (2) G-P(sol) polarization free energy of solvation -80.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds