Wall clock time and date at job start Mon Mar 30 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 C 1.53002 * 109.47143 * 119.99863 * 2 1 3 5 5 N 1.46499 * 109.47138 * 174.99644 * 4 2 1 6 6 C 1.34777 * 119.99908 * 180.02562 * 5 4 2 7 7 O 1.21713 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.46520 * 120.00019 * 180.02562 * 6 5 4 9 9 C 1.36609 * 125.97879 * 179.97438 * 8 6 5 10 10 C 1.40257 * 106.73864 * 179.97438 * 9 8 6 11 11 C 1.35364 * 107.11744 * 359.97438 * 10 9 8 12 12 Cl 1.73594 * 125.63244 * 179.97438 * 11 10 9 13 13 O 1.33956 * 108.73375 * 359.75775 * 11 10 9 14 14 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 15 15 C 1.36937 * 119.99708 * 84.99749 * 14 2 1 16 16 H 1.07996 * 120.00283 * 0.02562 * 15 14 2 17 17 C 1.38815 * 119.99959 * 179.97438 * 15 14 2 18 18 N 1.31622 * 119.99483 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00333 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46769 * 60.00182 * 19 17 15 21 21 H 1.48499 * 109.47227 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47358 * 300.00630 * 19 17 15 23 23 H 1.09001 * 109.46832 * 59.99981 * 1 2 3 24 24 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 26 26 H 1.09000 * 109.47089 * 294.99987 * 4 2 1 27 27 H 1.09000 * 109.47173 * 55.00063 * 4 2 1 28 28 H 0.97006 * 120.00082 * 0.02562 * 5 4 2 29 29 H 1.07997 * 126.63448 * 359.94258 * 9 8 6 30 30 H 1.07996 * 126.43744 * 180.02562 * 10 9 8 31 31 H 0.97000 * 120.00117 * 265.00154 * 14 2 1 32 32 H 0.97000 * 119.99481 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5676 -1.8866 3.1424 8 6 5.6332 -1.5340 2.1323 9 6 6.4344 -2.1162 3.0732 10 6 7.7536 -1.9919 2.6134 11 6 7.7020 -1.3469 1.4244 12 17 9.0686 -0.9407 0.4340 13 8 6.4218 -1.0780 1.1360 14 7 2.0184 -0.6907 -1.1962 15 6 2.1491 -0.0075 -2.3758 16 1 1.8926 1.0404 -2.4242 17 6 2.6123 -0.6617 -3.5091 18 7 2.9254 -1.9388 -3.4498 19 14 2.7914 0.2702 -5.1180 20 1 3.7465 1.3927 -4.9361 21 1 3.3003 -0.6482 -6.1681 22 1 1.4693 0.8071 -5.5289 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7516 -0.1583 2.1370 27 1 1.6054 -1.7198 1.2952 28 1 3.9824 -0.4622 0.4319 29 1 6.1140 -2.5817 3.9935 30 1 8.6432 -2.3453 3.1134 31 1 2.2491 -1.6318 -1.1526 32 1 3.2488 -2.3960 -4.2418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662161047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:18 Heat of formation + Delta-G solvation = -13.477057 kcal Electronic energy + Delta-G solvation = -18337.029334 eV Core-core repulsion = 15132.902259 eV Total energy + Delta-G solvation = -3204.127076 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.83060 -39.28775 -37.19062 -36.40660 -33.81762 -33.20780 -31.93747 -29.91295 -28.70473 -26.07308 -23.78498 -22.77661 -22.05318 -20.31795 -20.11859 -18.51658 -17.37018 -16.70867 -16.66098 -15.83324 -15.20428 -14.56622 -14.19583 -13.79561 -13.62968 -13.33740 -13.20346 -13.04437 -12.39778 -12.26145 -12.14135 -12.02696 -11.56959 -11.41617 -10.87578 -10.78849 -10.41946 -10.24372 -10.18425 -10.03631 -9.74019 -9.01172 -8.93378 -8.57796 -7.07205 -5.82934 -3.13757 0.87429 0.96086 2.07382 2.97725 3.25169 3.39903 3.44915 3.45788 3.54694 4.53015 4.62261 4.85059 5.26432 5.36306 5.43245 5.44598 5.53257 5.59763 5.87839 6.01727 6.03791 6.13473 6.23337 6.48994 6.52380 6.65441 6.74216 6.98616 7.63766 7.72339 8.25535 8.34275 9.46036 9.99859 10.35315 11.38836 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.005818 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.538323 B = 4811.214641 C = 6503.485890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.055 0.945 4 C 0.113 3.887 5 N -0.696 5.696 6 C 0.597 3.403 7 O -0.530 6.530 8 C -0.047 4.047 9 C -0.122 4.122 10 C -0.188 4.188 11 C 0.049 3.951 12 Cl 0.032 6.968 13 O -0.148 6.148 14 N -0.724 5.724 15 C -0.246 4.246 16 H 0.071 0.929 17 C -0.009 4.009 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.417 0.583 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.385 0.615 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.801 1.689 11.931 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.073 0.927 4 C -0.011 4.011 5 N -0.346 5.346 6 C 0.382 3.618 7 O -0.409 6.409 8 C -0.100 4.100 9 C -0.143 4.143 10 C -0.208 4.208 11 C -0.030 4.030 12 Cl 0.061 6.939 13 O -0.044 6.044 14 N -0.367 5.367 15 C -0.377 4.377 16 H 0.089 0.911 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.254 0.746 29 H 0.187 0.813 30 H 0.184 0.816 31 H 0.219 0.781 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.359 1.686 12.063 14.773 hybrid contribution 0.660 0.271 -1.493 1.654 sum 9.019 1.957 10.570 14.032 Atomic orbital electron populations 1.22356 0.98074 1.01358 1.00468 1.20526 0.92853 0.95799 0.86001 0.92728 1.21836 0.78425 1.01666 0.99212 1.45965 1.08874 1.57020 1.22759 1.16470 0.82690 0.79195 0.83435 1.90866 1.66659 1.49529 1.33868 1.22341 0.91832 1.06253 0.89551 1.21880 0.91061 1.00657 1.00679 1.21490 0.99232 1.04978 0.95080 1.22851 0.81547 1.04203 0.94380 1.98449 1.32585 1.92785 1.70128 1.84080 1.15279 1.62942 1.42077 1.42470 1.78111 1.10823 1.05253 1.19163 1.37292 0.93883 0.87314 0.91126 1.24749 1.01833 0.95915 0.98050 1.69655 1.50291 1.08628 1.29091 0.86286 0.77787 0.78619 0.83566 1.21234 1.21708 1.21258 0.92221 0.93132 0.94120 0.91228 0.91235 0.74590 0.81333 0.81625 0.78068 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 2 C 0.16 2.93 3.05 -67.93 -0.21 2.72 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 C 0.11 1.88 5.23 -4.04 -0.02 1.86 16 5 N -0.70 -11.96 5.38 -61.67 -0.33 -12.30 16 6 C 0.60 10.21 7.78 -12.92 -0.10 10.11 16 7 O -0.53 -9.95 16.86 5.18 0.09 -9.86 16 8 C -0.05 -0.72 7.13 -36.83 -0.26 -0.98 16 9 C -0.12 -1.55 10.62 -39.41 -0.42 -1.97 16 10 C -0.19 -2.09 10.84 -39.85 -0.43 -2.53 16 11 C 0.05 0.64 7.93 29.71 0.24 0.88 16 12 Cl 0.03 0.36 29.30 -51.86 -1.52 -1.16 16 13 O -0.15 -2.31 10.40 4.72 0.05 -2.26 16 14 N -0.72 -16.97 4.56 -53.42 -0.24 -17.21 16 15 C -0.25 -6.46 9.93 -15.06 -0.15 -6.61 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 19 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.42 7.55 7.89 -40.82 -0.32 7.23 16 29 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.39 9.82 7.80 -40.82 -0.32 9.50 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -29.66 304.67 -6.33 -35.99 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -3.57 Total: 11.16 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.10 Total: 0.76 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.15 Total: -56.05 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.14 Total: -12.12 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.52 Total: -1.16 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.66 -6.33 -35.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662161047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.516 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds