Wall clock time and date at job start Mon Mar 30 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 C 1.53002 * 109.47143 * 119.99863 * 2 1 3 5 5 N 1.46499 * 109.47138 * 174.99644 * 4 2 1 6 6 C 1.34777 * 119.99908 * 180.02562 * 5 4 2 7 7 O 1.21713 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.46520 * 120.00019 * 180.02562 * 6 5 4 9 9 C 1.36609 * 125.97879 * 179.97438 * 8 6 5 10 10 C 1.40257 * 106.73864 * 179.97438 * 9 8 6 11 11 C 1.35364 * 107.11744 * 359.97438 * 10 9 8 12 12 Cl 1.73594 * 125.63244 * 179.97438 * 11 10 9 13 13 O 1.33956 * 108.73375 * 359.75775 * 11 10 9 14 14 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 15 15 C 1.36937 * 119.99708 * 84.99749 * 14 2 1 16 16 H 1.07996 * 120.00283 * 0.02562 * 15 14 2 17 17 C 1.38815 * 119.99959 * 179.97438 * 15 14 2 18 18 N 1.31622 * 119.99483 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00333 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46769 * 60.00182 * 19 17 15 21 21 H 1.48499 * 109.47227 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47358 * 300.00630 * 19 17 15 23 23 H 1.09001 * 109.46832 * 59.99981 * 1 2 3 24 24 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 26 26 H 1.09000 * 109.47089 * 294.99987 * 4 2 1 27 27 H 1.09000 * 109.47173 * 55.00063 * 4 2 1 28 28 H 0.97006 * 120.00082 * 0.02562 * 5 4 2 29 29 H 1.07997 * 126.63448 * 359.94258 * 9 8 6 30 30 H 1.07996 * 126.43744 * 180.02562 * 10 9 8 31 31 H 0.97000 * 120.00117 * 265.00154 * 14 2 1 32 32 H 0.97000 * 119.99481 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5676 -1.8866 3.1424 8 6 5.6332 -1.5340 2.1323 9 6 6.4344 -2.1162 3.0732 10 6 7.7536 -1.9919 2.6134 11 6 7.7020 -1.3469 1.4244 12 17 9.0686 -0.9407 0.4340 13 8 6.4218 -1.0780 1.1360 14 7 2.0184 -0.6907 -1.1962 15 6 2.1491 -0.0075 -2.3758 16 1 1.8926 1.0404 -2.4242 17 6 2.6123 -0.6617 -3.5091 18 7 2.9254 -1.9388 -3.4498 19 14 2.7914 0.2702 -5.1180 20 1 3.7465 1.3927 -4.9361 21 1 3.3003 -0.6482 -6.1681 22 1 1.4693 0.8071 -5.5289 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7516 -0.1583 2.1370 27 1 1.6054 -1.7198 1.2952 28 1 3.9824 -0.4622 0.4319 29 1 6.1140 -2.5817 3.9935 30 1 8.6432 -2.3453 3.1134 31 1 2.2491 -1.6318 -1.1526 32 1 3.2488 -2.3960 -4.2418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662161047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:18 Heat of formation + Delta-G solvation = -33.613497 kcal Electronic energy + Delta-G solvation = -18337.902516 eV Core-core repulsion = 15132.902259 eV Total energy + Delta-G solvation = -3205.000257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.88804 -40.63205 -38.13620 -37.96821 -35.36092 -34.34292 -33.67459 -31.14608 -30.39864 -27.39204 -25.71702 -24.00171 -23.06697 -21.77316 -21.36524 -19.78498 -19.20957 -17.87018 -17.78465 -17.24913 -16.83002 -16.13921 -15.68068 -15.42319 -14.87447 -14.56962 -14.34047 -14.16451 -13.90824 -13.66647 -13.48573 -13.23115 -13.08669 -12.75198 -12.51549 -12.50389 -12.24259 -11.74617 -11.68170 -11.48258 -11.22977 -10.96621 -10.25938 -9.67210 -9.03601 -7.92421 -5.21513 -0.24138 -0.01380 1.09632 1.48795 1.50237 1.56187 1.82332 2.01204 2.34916 2.57040 3.41777 3.65472 3.73719 3.88328 3.95496 4.26452 4.37741 4.38510 4.61936 4.71634 4.73807 4.82796 5.07177 5.11355 5.22220 5.27766 5.48924 5.55299 5.59121 6.28071 6.36293 6.91141 7.35442 8.07841 8.31724 9.30115 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.005818 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.538323 B = 4811.214641 C = 6503.485890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 H 0.059 0.941 4 C 0.120 3.880 5 N -0.701 5.701 6 C 0.598 3.402 7 O -0.552 6.552 8 C -0.083 4.083 9 C -0.104 4.104 10 C -0.170 4.170 11 C 0.035 3.965 12 Cl 0.044 6.956 13 O -0.172 6.172 14 N -0.733 5.733 15 C -0.236 4.236 16 H 0.078 0.922 17 C -0.071 4.071 18 N -0.967 5.967 19 Si 0.967 3.033 20 H -0.278 1.278 21 H -0.300 1.300 22 H -0.280 1.280 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.411 0.589 29 H 0.189 0.811 30 H 0.204 0.796 31 H 0.372 0.628 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.448 2.437 13.091 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.077 0.923 4 C -0.003 4.003 5 N -0.350 5.350 6 C 0.385 3.615 7 O -0.434 6.434 8 C -0.135 4.135 9 C -0.125 4.125 10 C -0.190 4.190 11 C -0.043 4.043 12 Cl 0.073 6.927 13 O -0.070 6.070 14 N -0.374 5.374 15 C -0.368 4.368 16 H 0.096 0.904 17 C -0.264 4.264 18 N -0.617 5.617 19 Si 0.797 3.203 20 H -0.205 1.205 21 H -0.227 1.227 22 H -0.206 1.206 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.247 0.753 29 H 0.206 0.794 30 H 0.221 0.779 31 H 0.204 0.796 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.984 2.479 13.258 16.206 hybrid contribution 0.509 0.073 -1.762 1.836 sum 9.493 2.552 11.496 15.126 Atomic orbital electron populations 1.22219 0.96312 1.01337 1.01511 1.20727 0.93919 0.95625 0.84904 0.92276 1.21769 0.78291 1.01280 0.99007 1.45990 1.09013 1.57253 1.22696 1.16645 0.83562 0.78454 0.82860 1.90837 1.67518 1.50496 1.34501 1.22155 0.91318 1.09025 0.90974 1.22259 0.91285 0.98606 1.00343 1.21926 0.99815 1.03250 0.93984 1.23331 0.81138 1.04468 0.95353 1.98452 1.31561 1.92717 1.69998 1.84030 1.16418 1.63819 1.42715 1.42610 1.78409 1.10292 1.06113 1.19537 1.34933 0.94198 0.88138 0.90384 1.25470 1.03006 0.96716 1.01179 1.69813 1.52450 1.10151 1.29307 0.85313 0.77855 0.77335 0.79840 1.20462 1.22687 1.20609 0.93699 0.93710 0.90489 0.88901 0.92077 0.75268 0.79414 0.77856 0.79583 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 9.49 71.98 0.68 -4.26 16 2 C 0.16 5.65 3.05 44.99 0.14 5.79 16 3 H 0.06 2.10 8.08 -2.38 -0.02 2.08 16 4 C 0.12 3.92 5.23 86.38 0.45 4.37 16 5 N -0.70 -24.14 5.38 -467.22 -2.52 -26.65 16 6 C 0.60 20.40 7.78 86.40 0.67 21.07 16 7 O -0.55 -20.49 16.86 -4.39 -0.07 -20.56 16 8 C -0.08 -2.50 7.13 24.05 0.17 -2.33 16 9 C -0.10 -2.44 10.62 22.38 0.24 -2.20 16 10 C -0.17 -3.34 10.84 22.10 0.24 -3.10 16 11 C 0.04 0.88 7.93 67.16 0.53 1.41 16 12 Cl 0.04 0.94 29.30 -2.72 -0.08 0.86 16 13 O -0.17 -5.36 10.40 -6.02 -0.06 -5.42 16 14 N -0.73 -34.51 4.56 -322.92 -1.47 -35.98 16 15 C -0.24 -12.40 9.93 84.03 0.83 -11.57 16 16 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 18 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 19 Si 0.97 45.18 29.55 68.60 2.03 47.20 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.41 15.17 7.89 -92.70 -0.73 14.44 16 29 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.20 2.33 8.06 -2.91 -0.02 2.30 16 31 H 0.37 19.38 7.80 -92.71 -0.72 18.65 16 32 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -63.76 304.67 2.24 -61.52 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.29 Total: 30.97 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 4.43 Total: 5.69 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -3.71 Total: -120.26 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.14 Total: -25.98 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 17 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Total: -63.76 2.24 -61.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662161047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.907 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds