Wall clock time and date at job start Mon Mar 30 2020 01:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47222 * 2 1 4 4 C 1.53000 * 109.47367 * 120.00448 * 2 1 3 5 5 N 1.46496 * 109.47207 * 174.99444 * 4 2 1 6 6 C 1.34773 * 119.99965 * 180.02562 * 5 4 2 7 7 O 1.21635 * 120.00272 * 359.97438 * 6 5 4 8 8 C 1.47217 * 120.00144 * 180.02562 * 6 5 4 9 9 C 1.47080 * 127.20352 * 359.97438 * 8 6 5 10 10 C 1.34125 * 105.97288 * 179.76228 * 9 8 6 11 11 O 1.34288 * 109.17598 * 0.23924 * 10 9 8 12 12 C 1.33684 * 110.91818 * 0.02562 * 11 10 9 13 13 Cl 1.73598 * 125.83184 * 180.02562 * 12 11 10 14 14 N 1.46513 * 109.46884 * 240.00401 * 2 1 3 15 15 C 1.36936 * 119.99812 * 84.99924 * 14 2 1 16 16 H 1.07996 * 120.00536 * 0.02562 * 15 14 2 17 17 C 1.38817 * 119.99563 * 179.97438 * 15 14 2 18 18 N 1.31619 * 119.99964 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99858 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.47276 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47263 * 120.00176 * 19 17 15 22 22 H 1.48500 * 109.47182 * 240.00502 * 19 17 15 23 23 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46733 * 299.99951 * 1 2 3 25 25 H 1.09002 * 109.47196 * 59.99251 * 1 2 3 26 26 H 1.09003 * 109.46989 * 54.99701 * 4 2 1 27 27 H 1.08995 * 109.47008 * 294.99889 * 4 2 1 28 28 H 0.97003 * 120.00000 * 0.02562 * 5 4 2 29 29 H 1.08002 * 127.01734 * 0.02923 * 9 8 6 30 30 H 1.07995 * 125.40981 * 180.27978 * 10 9 8 31 31 H 0.96998 * 119.99179 * 265.00275 * 14 2 1 32 32 H 0.96999 * 119.99573 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8266 1.1904 6 6 4.1730 -1.4294 2.1904 7 8 3.5682 -1.8858 3.1420 8 6 5.6402 -1.5347 2.1316 9 6 6.5252 -1.0420 1.0652 10 6 7.7722 -1.3573 1.4452 11 8 7.7256 -1.9930 2.6272 12 6 6.4648 -2.1141 3.0547 13 17 5.9615 -2.8702 4.5341 14 7 2.0183 -0.6906 -1.1963 15 6 2.1490 -0.0074 -2.3758 16 1 1.8926 1.0406 -2.4242 17 6 2.6122 -0.6616 -3.5092 18 7 2.9252 -1.9387 -3.4501 19 14 2.7912 0.2705 -5.1180 20 1 2.3773 1.6830 -4.9205 21 1 4.2083 0.2277 -5.5599 22 1 1.9309 -0.3578 -6.1525 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 1.6054 -1.7199 1.2950 27 1 1.7517 -0.1585 2.1369 28 1 3.9824 -0.4623 0.4317 29 1 6.2313 -0.5271 0.1624 30 1 8.6709 -1.1347 0.8894 31 1 2.2489 -1.6317 -1.1527 32 1 3.2492 -2.3957 -4.2420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690571117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:24 Heat of formation + Delta-G solvation = -12.982241 kcal Electronic energy + Delta-G solvation = -18405.497713 eV Core-core repulsion = 15201.392095 eV Total energy + Delta-G solvation = -3204.105619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.65467 -39.11564 -37.04801 -36.27996 -33.62874 -32.97617 -31.73576 -29.64886 -28.74546 -26.17957 -23.82615 -23.00003 -21.51233 -20.20394 -19.86685 -18.43841 -17.32901 -16.53530 -16.24116 -15.67138 -15.19920 -14.92884 -14.40664 -13.74849 -13.68680 -13.30131 -12.99672 -12.86079 -12.28912 -12.17479 -12.10309 -11.94712 -11.38813 -11.28385 -10.92394 -10.78366 -10.36125 -10.02562 -9.93464 -9.75305 -9.71458 -9.02534 -8.79937 -8.54189 -7.07378 -5.84691 -3.15116 1.02998 1.14773 1.97132 3.30475 3.36780 3.43509 3.45406 3.52057 3.60439 4.51330 4.61145 4.80150 5.20021 5.40876 5.46339 5.51902 5.56958 5.62224 5.93326 6.07347 6.11655 6.17526 6.31713 6.54950 6.67094 6.73605 6.83053 7.03180 7.63361 7.93464 8.32597 8.55004 9.44651 9.99717 10.35570 11.37182 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.004958 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.071549 B = 5646.060045 C = 6686.293352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.116 3.884 5 N -0.701 5.701 6 C 0.580 3.420 7 O -0.542 6.542 8 C -0.199 4.199 9 C -0.174 4.174 10 C -0.024 4.024 11 O -0.172 6.172 12 C 0.089 3.911 13 Cl 0.053 6.947 14 N -0.724 5.724 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.929 5.929 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.411 0.589 29 H 0.171 0.829 30 H 0.218 0.782 31 H 0.385 0.615 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 1.994 11.676 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.072 0.928 4 C -0.008 4.008 5 N -0.352 5.352 6 C 0.366 3.634 7 O -0.421 6.421 8 C -0.204 4.204 9 C -0.193 4.193 10 C -0.090 4.090 11 O -0.070 6.070 12 C 0.010 3.990 13 Cl 0.082 6.918 14 N -0.367 5.367 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.247 0.753 29 H 0.188 0.812 30 H 0.234 0.766 31 H 0.219 0.781 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.787 1.639 12.476 14.798 hybrid contribution 0.276 0.241 -1.446 1.492 sum 8.062 1.880 11.030 13.792 Atomic orbital electron populations 1.22356 0.98226 1.01315 1.00384 1.20523 0.92734 0.95744 0.86136 0.92832 1.21718 0.79036 1.01300 0.98752 1.45752 1.08268 1.58242 1.22988 1.17049 0.84856 0.78562 0.82927 1.90796 1.69254 1.48580 1.33498 1.21216 0.95004 1.07794 0.96421 1.23035 0.91561 1.04288 1.00411 1.23958 1.00388 0.99710 0.84953 1.83702 1.27465 1.61724 1.34097 1.22591 0.82724 1.01319 0.92327 1.98468 1.86943 1.78883 1.27487 1.42494 1.78070 1.10857 1.05244 1.19273 1.36823 0.93912 0.87339 0.91047 1.24741 1.02051 0.95893 0.97981 1.69680 1.50569 1.08624 1.28852 0.86158 0.77280 0.78818 0.84132 1.20568 1.21903 1.21897 0.93170 0.94154 0.92325 0.91634 0.91640 0.75267 0.81164 0.76601 0.78050 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.49 37.16 0.35 -2.42 16 2 C 0.16 2.93 3.05 -67.92 -0.21 2.72 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C 0.12 1.98 5.23 -4.04 -0.02 1.96 16 5 N -0.70 -11.94 5.38 -61.45 -0.33 -12.27 16 6 C 0.58 10.18 7.81 -12.61 -0.10 10.09 16 7 O -0.54 -10.64 15.65 5.25 0.08 -10.56 16 8 C -0.20 -3.06 6.32 -103.24 -0.65 -3.71 16 9 C -0.17 -2.19 10.60 -37.45 -0.40 -2.59 16 10 C -0.02 -0.25 12.03 29.28 0.35 0.10 16 11 O -0.17 -2.16 10.53 7.38 0.08 -2.09 16 12 C 0.09 1.29 7.99 30.16 0.24 1.53 16 13 Cl 0.05 0.73 27.91 -51.86 -1.45 -0.72 16 14 N -0.72 -16.68 4.56 -53.42 -0.24 -16.92 16 15 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 19 Si 0.90 21.30 29.55 -169.99 -5.02 16.28 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.41 6.97 7.31 -40.82 -0.30 6.67 16 29 H 0.17 1.99 7.74 -52.49 -0.41 1.58 16 30 H 0.22 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.39 9.70 7.80 -40.82 -0.32 9.38 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 301.73 15.07 4.55 4.55 Total: -1.00 -30.26 301.73 -5.81 -36.08 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -3.52 Total: 10.73 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.68 Total: 0.92 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.15 Total: -55.18 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.16 Total: -12.64 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -1.45 Total: -0.72 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.26 -5.81 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690571117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.093 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds