Wall clock time and date at job start Mon Mar 30 2020 01:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47222 * 2 1 4 4 C 1.53000 * 109.47367 * 120.00448 * 2 1 3 5 5 N 1.46496 * 109.47207 * 174.99444 * 4 2 1 6 6 C 1.34773 * 119.99965 * 180.02562 * 5 4 2 7 7 O 1.21635 * 120.00272 * 359.97438 * 6 5 4 8 8 C 1.47217 * 120.00144 * 180.02562 * 6 5 4 9 9 C 1.47080 * 127.20352 * 359.97438 * 8 6 5 10 10 C 1.34125 * 105.97288 * 179.76228 * 9 8 6 11 11 O 1.34288 * 109.17598 * 0.23924 * 10 9 8 12 12 C 1.33684 * 110.91818 * 0.02562 * 11 10 9 13 13 Cl 1.73598 * 125.83184 * 180.02562 * 12 11 10 14 14 N 1.46513 * 109.46884 * 240.00401 * 2 1 3 15 15 C 1.36936 * 119.99812 * 84.99924 * 14 2 1 16 16 H 1.07996 * 120.00536 * 0.02562 * 15 14 2 17 17 C 1.38817 * 119.99563 * 179.97438 * 15 14 2 18 18 N 1.31619 * 119.99964 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99858 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.47276 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47263 * 120.00176 * 19 17 15 22 22 H 1.48500 * 109.47182 * 240.00502 * 19 17 15 23 23 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46733 * 299.99951 * 1 2 3 25 25 H 1.09002 * 109.47196 * 59.99251 * 1 2 3 26 26 H 1.09003 * 109.46989 * 54.99701 * 4 2 1 27 27 H 1.08995 * 109.47008 * 294.99889 * 4 2 1 28 28 H 0.97003 * 120.00000 * 0.02562 * 5 4 2 29 29 H 1.08002 * 127.01734 * 0.02923 * 9 8 6 30 30 H 1.07995 * 125.40981 * 180.27978 * 10 9 8 31 31 H 0.96998 * 119.99179 * 265.00275 * 14 2 1 32 32 H 0.96999 * 119.99573 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8266 1.1904 6 6 4.1730 -1.4294 2.1904 7 8 3.5682 -1.8858 3.1420 8 6 5.6402 -1.5347 2.1316 9 6 6.5252 -1.0420 1.0652 10 6 7.7722 -1.3573 1.4452 11 8 7.7256 -1.9930 2.6272 12 6 6.4648 -2.1141 3.0547 13 17 5.9615 -2.8702 4.5341 14 7 2.0183 -0.6906 -1.1963 15 6 2.1490 -0.0074 -2.3758 16 1 1.8926 1.0406 -2.4242 17 6 2.6122 -0.6616 -3.5092 18 7 2.9252 -1.9387 -3.4501 19 14 2.7912 0.2705 -5.1180 20 1 2.3773 1.6830 -4.9205 21 1 4.2083 0.2277 -5.5599 22 1 1.9309 -0.3578 -6.1525 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 1.6054 -1.7199 1.2950 27 1 1.7517 -0.1585 2.1369 28 1 3.9824 -0.4623 0.4317 29 1 6.2313 -0.5271 0.1624 30 1 8.6709 -1.1347 0.8894 31 1 2.2489 -1.6317 -1.1527 32 1 3.2492 -2.3957 -4.2420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690571117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:24 Heat of formation + Delta-G solvation = -33.689069 kcal Electronic energy + Delta-G solvation = -18406.395629 eV Core-core repulsion = 15201.392095 eV Total energy + Delta-G solvation = -3205.003534 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.65715 -40.49624 -38.13361 -37.84447 -35.20590 -34.22218 -33.35506 -30.71779 -30.46610 -27.54203 -25.70945 -24.24862 -22.52929 -21.69634 -21.08512 -19.67867 -19.15290 -17.56114 -17.43653 -17.10368 -16.77412 -16.13215 -15.96318 -15.36006 -15.15040 -14.71298 -14.17317 -13.99925 -13.79600 -13.61713 -13.42950 -13.21659 -13.04663 -12.79418 -12.47552 -12.33656 -12.10965 -11.68933 -11.62902 -11.12498 -10.99994 -10.94444 -10.05234 -9.68957 -9.00256 -7.89043 -5.18201 -0.01165 0.02128 1.01936 1.51127 1.53450 1.61737 2.13972 2.25221 2.48756 2.60067 3.45221 3.61710 3.66365 3.91469 4.00915 4.19254 4.41322 4.46784 4.66205 4.72803 4.76192 4.88875 5.08789 5.19116 5.27839 5.40907 5.59596 5.60052 5.70410 6.31446 6.56434 7.18481 7.39015 8.10919 8.35918 9.33879 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.004958 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.071549 B = 5646.060045 C = 6686.293352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.061 0.939 4 C 0.124 3.876 5 N -0.700 5.700 6 C 0.576 3.424 7 O -0.569 6.569 8 C -0.223 4.223 9 C -0.195 4.195 10 C 0.004 3.996 11 O -0.170 6.170 12 C 0.080 3.920 13 Cl 0.053 6.947 14 N -0.732 5.732 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.069 4.069 18 N -0.967 5.967 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.294 1.294 22 H -0.302 1.302 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.411 0.589 29 H 0.177 0.823 30 H 0.267 0.733 31 H 0.372 0.628 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 3.327 11.742 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.079 0.921 4 C 0.000 4.000 5 N -0.350 5.350 6 C 0.364 3.636 7 O -0.450 6.450 8 C -0.229 4.229 9 C -0.214 4.214 10 C -0.061 4.061 11 O -0.067 6.067 12 C 0.001 3.999 13 Cl 0.082 6.918 14 N -0.373 5.373 15 C -0.364 4.364 16 H 0.097 0.903 17 C -0.262 4.262 18 N -0.618 5.618 19 Si 0.796 3.204 20 H -0.191 1.191 21 H -0.221 1.221 22 H -0.230 1.230 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.248 0.752 29 H 0.194 0.806 30 H 0.282 0.718 31 H 0.204 0.796 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.631 3.019 12.570 15.544 hybrid contribution 0.012 -0.136 -1.399 1.406 sum 8.643 2.883 11.171 14.415 Atomic orbital electron populations 1.22235 0.96711 1.01167 1.01417 1.20691 0.93629 0.95674 0.84939 0.92059 1.21625 0.79107 1.00645 0.98640 1.45736 1.08236 1.58148 1.22916 1.17375 0.85894 0.77914 0.82433 1.90768 1.70103 1.49731 1.34429 1.21220 0.94154 1.09354 0.98160 1.23159 0.92015 1.05742 1.00450 1.24898 1.01236 0.96530 0.83462 1.83748 1.26369 1.61668 1.34878 1.22627 0.83337 1.01522 0.92414 1.98461 1.87123 1.78838 1.27404 1.42621 1.78311 1.10302 1.06045 1.19613 1.34568 0.94181 0.88058 0.90340 1.25427 1.03121 0.96629 1.00988 1.69828 1.52633 1.10169 1.29168 0.85184 0.76639 0.78234 0.80314 1.19094 1.22119 1.22992 0.93941 0.90767 0.93589 0.92926 0.89799 0.75239 0.80602 0.71755 0.79566 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 9.49 71.98 0.68 -4.34 16 2 C 0.16 5.67 3.05 44.99 0.14 5.81 16 3 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 4 C 0.12 4.12 5.23 86.38 0.45 4.57 16 5 N -0.70 -23.61 5.38 -466.58 -2.51 -26.12 16 6 C 0.58 20.22 7.81 86.60 0.68 20.90 16 7 O -0.57 -22.43 15.65 -4.14 -0.06 -22.50 16 8 C -0.22 -6.76 6.32 -18.97 -0.12 -6.88 16 9 C -0.19 -4.62 10.60 23.65 0.25 -4.37 16 10 C 0.00 0.07 12.03 66.88 0.80 0.87 16 11 O -0.17 -3.90 10.53 3.48 0.04 -3.87 16 12 C 0.08 2.25 7.99 67.45 0.54 2.79 16 13 Cl 0.05 1.42 27.91 -2.72 -0.08 1.35 16 14 N -0.73 -33.44 4.56 -322.91 -1.47 -34.91 16 15 C -0.23 -11.77 9.93 84.03 0.83 -10.94 16 16 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 17 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 18 N -0.97 -56.20 13.06 21.65 0.28 -55.92 16 19 Si 0.97 43.61 29.55 68.60 2.03 45.63 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.41 13.83 7.31 -92.71 -0.68 13.15 16 29 H 0.18 3.89 7.74 -2.91 -0.02 3.87 16 30 H 0.27 1.82 8.06 -2.91 -0.02 1.79 16 31 H 0.37 18.94 7.80 -92.71 -0.72 18.22 16 32 H 0.25 14.17 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -64.76 301.73 2.71 -62.05 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.24 Total: 29.11 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 4.72 Total: 5.18 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -3.70 Total: -116.95 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.03 Total: -26.37 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: 1.42 SS G_CDS: -0.08 Total: 1.35 kcal Total: -64.76 2.71 -62.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690571117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.362 kcal (2) G-P(sol) polarization free energy of solvation -64.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds