Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 120.00453 * 2 1 4 4 C 1.52992 * 109.47526 * 270.00615 * 3 2 1 5 5 N 1.46503 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.36935 * 120.00214 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99847 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99816 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99562 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00141 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47216 * 89.99659 * 10 8 6 12 12 H 1.48492 * 109.47090 * 210.00126 * 10 8 6 13 13 H 1.48502 * 109.47019 * 329.99646 * 10 8 6 14 14 C 1.34781 * 119.99419 * 180.02562 * 2 1 3 15 15 O 1.21720 * 119.99269 * 183.36858 * 14 2 1 16 16 C 1.46494 * 120.00460 * 3.36939 * 14 2 1 17 17 O 1.34987 * 126.00451 * 353.21748 * 16 14 2 18 18 C 1.33944 * 109.40413 * 179.73577 * 17 16 14 19 19 C 1.35075 * 108.81671 * 359.97438 * 18 17 16 20 20 C 1.36709 * 126.00889 * 172.90234 * 16 14 2 21 21 Cl 1.73599 * 126.66702 * 0.29075 * 20 16 14 22 22 H 1.08996 * 109.46902 * 263.98737 * 1 2 3 23 23 H 1.09003 * 109.46748 * 23.98404 * 1 2 3 24 24 H 1.09001 * 109.47091 * 143.97812 * 1 2 3 25 25 H 1.09006 * 109.46871 * 30.00557 * 3 2 1 26 26 H 1.08997 * 109.47317 * 149.99997 * 3 2 1 27 27 H 1.08997 * 109.47159 * 299.99621 * 4 3 2 28 28 H 1.09002 * 109.47776 * 59.99934 * 4 3 2 29 29 H 0.97000 * 119.99374 * 0.02562 * 5 4 3 30 30 H 0.96998 * 119.99724 * 180.02562 * 9 8 6 31 31 H 1.07996 * 125.59092 * 180.02562 * 18 17 16 32 32 H 1.08001 * 126.43466 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7104 -1.4424 5 7 3.1847 2.9794 -1.4424 6 6 3.5273 3.5723 -2.6282 7 1 3.2575 3.1045 -3.5635 8 6 4.2205 4.7750 -2.6281 9 7 4.5494 5.3450 -3.7679 10 14 4.6865 5.5843 -1.0103 11 1 6.0229 5.0996 -0.5812 12 1 4.7280 7.0580 -1.1880 13 1 3.6789 5.2387 0.0243 14 6 2.1388 -1.1673 -0.0005 15 8 3.3545 -1.1682 0.0614 16 6 1.4083 -2.4348 -0.0756 17 8 0.0677 -2.5826 -0.0192 18 6 -0.2417 -3.8815 -0.1249 19 6 0.8999 -4.5923 -0.2520 20 6 1.9639 -3.6754 -0.2213 21 17 3.6555 -4.0457 -0.3442 22 1 -0.3633 -0.1076 1.0220 23 1 -0.3633 0.9390 -0.4177 24 1 -0.3633 -0.8312 -0.6044 25 1 1.6086 2.0283 0.5140 26 1 3.1500 1.1383 0.5138 27 1 3.0416 0.9508 -1.9563 28 1 1.5002 1.8409 -1.9563 29 1 3.4272 3.3993 -0.6023 30 1 5.0341 6.1852 -3.7678 31 1 -1.2401 -4.2929 -0.1115 32 1 0.9797 -5.6642 -0.3573 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731950397.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = -19.028897 kcal Electronic energy + Delta-G solvation = -18391.936499 eV Core-core repulsion = 15187.568677 eV Total energy + Delta-G solvation = -3204.367822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.86624 -40.78970 -37.86592 -37.50249 -36.24818 -33.97761 -33.66851 -31.54594 -29.93790 -27.69379 -25.93321 -23.93238 -23.07728 -22.75901 -21.14171 -19.76033 -18.87668 -17.80860 -17.70216 -17.22982 -16.48331 -16.28971 -15.64273 -15.42778 -15.07939 -14.88108 -14.70760 -14.49332 -14.18370 -14.02315 -13.47193 -13.42445 -13.09293 -12.96733 -12.74435 -12.37681 -12.15606 -12.10132 -11.83874 -11.28931 -11.03170 -10.74596 -10.00187 -9.64051 -9.38627 -8.06207 -5.42440 -0.20264 0.88323 1.21514 1.37161 1.43041 1.48993 1.53889 1.88552 2.06917 2.46978 3.24965 3.36754 3.65005 3.70929 4.03348 4.11293 4.18078 4.27181 4.37469 4.49535 4.66633 4.74543 4.91500 4.95467 5.01281 5.15922 5.36998 5.65364 5.70060 6.16326 6.16879 6.85398 7.02392 7.74740 7.96731 9.15174 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.004127 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.062996 B = 6782.505776 C = 7233.556208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.600 5.600 3 C 0.118 3.882 4 C 0.149 3.851 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.051 0.949 8 C -0.061 4.061 9 N -0.983 5.983 10 Si 0.960 3.040 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.243 1.243 14 C 0.584 3.416 15 O -0.545 6.545 16 C -0.085 4.085 17 O -0.142 6.142 18 C 0.035 3.965 19 C -0.227 4.227 20 C -0.063 4.063 21 Cl -0.027 7.027 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.003 0.997 28 H 0.035 0.965 29 H 0.370 0.630 30 H 0.260 0.740 31 H 0.273 0.727 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.865 -21.864 12.968 29.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.331 5.331 3 C -0.005 4.005 4 C 0.021 3.979 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.069 0.931 8 C -0.253 4.253 9 N -0.632 5.632 10 Si 0.785 3.215 11 H -0.207 1.207 12 H -0.216 1.216 13 H -0.167 1.167 14 C 0.372 3.628 15 O -0.424 6.424 16 C -0.138 4.138 17 O -0.037 6.037 18 C -0.034 4.034 19 C -0.246 4.246 20 C -0.093 4.093 21 Cl 0.002 6.998 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.130 0.870 26 H 0.093 0.907 27 H 0.021 0.979 28 H 0.053 0.947 29 H 0.203 0.797 30 H 0.069 0.931 31 H 0.289 0.711 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.299 -21.599 12.805 29.403 hybrid contribution 1.099 0.505 0.146 1.218 sum -14.200 -21.094 12.950 28.536 Atomic orbital electron populations 1.22305 0.76096 1.04829 1.03962 1.47724 1.09043 1.04646 1.71684 1.21549 0.98237 0.84587 0.96172 1.20956 0.94581 0.86260 0.96081 1.42475 1.69127 1.24188 1.04252 1.18975 1.29479 1.02963 0.86061 0.93054 1.25577 1.00614 0.98350 1.00718 1.69891 1.46101 1.20318 1.26920 0.85349 0.78917 0.77320 0.79868 1.20723 1.21645 1.16708 1.16979 0.86145 0.82339 0.77332 1.90929 1.13556 1.86427 1.51525 1.21370 0.81990 0.94369 1.16075 1.84424 1.20379 1.28996 1.69884 1.25539 1.02130 0.78709 0.97056 1.22028 0.89555 1.02433 1.10546 1.21736 0.88436 0.93838 1.05340 1.98390 1.11133 1.94138 1.96110 0.89995 0.89075 0.89251 0.87016 0.90731 0.97886 0.94681 0.79676 0.93089 0.71141 0.79319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.63 127.77 1.23 2.43 16 2 N -0.60 -16.32 2.87 -851.70 -2.45 -18.77 16 3 C 0.12 3.69 5.52 86.38 0.48 4.16 16 4 C 0.15 6.09 6.58 86.38 0.57 6.66 16 5 N -0.75 -36.97 5.41 -343.45 -1.86 -38.83 16 6 C -0.24 -14.60 10.47 84.04 0.88 -13.72 16 7 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 8 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 9 N -0.98 -64.41 13.97 21.65 0.30 -64.11 16 10 Si 0.96 46.03 27.74 68.60 1.90 47.94 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 13 H -0.24 -10.21 6.52 99.48 0.65 -9.56 16 14 C 0.58 18.35 7.64 86.39 0.66 19.01 16 15 O -0.55 -21.52 15.13 -4.41 -0.07 -21.59 16 16 C -0.08 -2.09 6.77 24.06 0.16 -1.93 16 17 O -0.14 -2.23 7.29 -5.92 -0.04 -2.27 16 18 C 0.03 0.29 12.07 67.09 0.81 1.10 16 19 C -0.23 -3.03 10.88 22.09 0.24 -2.78 16 20 C -0.06 -1.48 6.75 22.46 0.15 -1.33 16 21 Cl -0.03 -0.73 27.87 -2.72 -0.08 -0.80 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.09 1.44 8.03 -2.39 -0.02 1.43 16 24 H 0.09 1.41 5.40 -2.39 -0.01 1.40 16 25 H 0.11 2.84 8.07 -2.38 -0.02 2.82 16 26 H 0.07 2.58 7.38 -2.39 -0.02 2.57 16 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.37 16.81 5.53 -92.71 -0.51 16.29 16 30 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 31 H 0.27 -1.02 8.06 -2.91 -0.02 -1.04 16 32 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -81.19 294.12 3.94 -77.25 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.58 Total: 10.80 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.65 Total: 10.39 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -4.00 Total: -121.70 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.11 Total: -23.86 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.94 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.80 kcal Total: -81.19 3.94 -77.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731950397.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.218 kcal (2) G-P(sol) polarization free energy of solvation -81.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds