Wall clock time and date at job start Mon Mar 30 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48504 * 109.47188 * 273.53726 * 3 2 1 5 5 H 1.48503 * 109.46830 * 33.53444 * 3 2 1 6 6 H 1.48499 * 109.47296 * 153.53282 * 3 2 1 7 7 C 1.39029 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00207 * 349.99453 * 7 2 1 9 9 N 1.36899 * 119.99899 * 170.00364 * 7 2 1 10 10 C 1.34778 * 119.99979 * 128.91021 * 9 7 2 11 11 O 1.21607 * 119.99880 * 183.66939 * 10 9 7 12 12 C 1.47606 * 120.00179 * 3.67360 * 10 9 7 13 13 C 1.40310 * 119.86809 * 330.26301 * 12 10 9 14 14 C 1.36246 * 120.44609 * 179.97438 * 13 12 10 15 15 C 1.39333 * 120.15905 * 0.04070 * 14 13 12 16 16 N 1.37269 * 133.70720 * 180.02562 * 15 14 13 17 17 H 0.97006 * 126.65780 * 359.92146 * 16 15 14 18 18 N 1.40228 * 106.68684 * 179.97438 * 16 15 14 19 19 N 1.28642 * 109.50729 * 359.76073 * 18 16 15 20 20 C 1.35424 * 110.13181 * 0.38759 * 19 18 16 21 21 C 1.38951 * 119.87365 * 150.24150 * 12 10 9 22 22 C 1.46504 * 119.99875 * 308.90482 * 9 7 2 23 23 C 1.52998 * 117.49850 * 0.03282 * 22 9 7 24 24 C 1.53000 * 117.50234 * 291.40578 * 22 9 7 25 25 H 0.96995 * 119.99582 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.77352 * 359.97438 * 13 12 10 27 27 H 1.08003 * 119.92068 * 179.97438 * 14 13 12 28 28 H 1.08001 * 120.22113 * 0.04485 * 21 12 10 29 29 H 1.08997 * 115.54886 * 145.73766 * 22 9 7 30 30 H 1.09000 * 117.49912 * 359.97438 * 23 22 9 31 31 H 1.08996 * 117.49968 * 145.01908 * 23 22 9 32 32 H 1.08990 * 117.50172 * 214.97592 * 24 22 9 33 33 H 1.09005 * 117.49460 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4206 2.0896 -1.3974 5 1 1.4847 2.6299 0.7735 6 1 3.5808 1.4197 0.6240 7 6 2.0089 -1.2040 -0.0005 8 1 1.4812 -2.1323 0.1615 9 7 3.3623 -1.2130 -0.2063 10 6 4.1699 -1.8693 0.6501 11 8 5.3764 -1.8219 0.5056 12 6 3.5899 -2.6457 1.7635 13 6 2.3676 -2.2511 2.3284 14 6 1.8213 -2.9594 3.3561 15 6 2.4744 -4.0840 3.8561 16 7 2.1883 -4.9811 4.8550 17 1 1.4086 -4.9762 5.4320 18 7 3.2427 -5.9053 4.8802 19 7 4.1003 -5.6036 3.9701 20 6 3.7013 -4.4947 3.3029 21 6 4.2561 -3.7648 2.2477 22 6 3.9328 -0.5092 -1.3577 23 6 2.9638 0.2175 -2.2925 24 6 3.6410 -1.0767 -2.7482 25 1 -0.4849 0.8400 0.0004 26 1 1.8565 -1.3799 1.9459 27 1 0.8803 -2.6478 3.7848 28 1 5.1970 -4.0678 1.8127 29 1 4.9104 -0.0556 -1.1942 30 1 1.9019 0.1715 -2.0512 31 1 3.3038 1.1494 -2.7442 32 1 4.4264 -0.9961 -3.4996 33 1 3.0249 -1.9740 -2.8064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299296156.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:54 Heat of formation + Delta-G solvation = 129.358001 kcal Electronic energy + Delta-G solvation = -20588.450006 eV Core-core repulsion = 17425.242324 eV Total energy + Delta-G solvation = -3163.207682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.76948 -39.49066 -37.15025 -36.14284 -33.56076 -33.33730 -31.97279 -29.99898 -29.64725 -25.40346 -24.29909 -23.14613 -22.13284 -21.91959 -21.19807 -19.44931 -18.11808 -17.60260 -17.34073 -15.77543 -15.50794 -15.31555 -14.86955 -14.40631 -14.01654 -13.88450 -13.67507 -13.17541 -12.68013 -12.51145 -12.07941 -11.74702 -11.61743 -11.56087 -11.27268 -11.00574 -10.96733 -10.78963 -10.51344 -10.18552 -9.87388 -9.45503 -9.27195 -8.83051 -8.45719 -8.10166 -7.68038 -6.65400 -4.44352 0.79767 1.38864 2.51707 2.59371 3.01869 3.16076 3.25825 3.44185 3.91042 4.01885 4.24775 4.42001 4.52007 4.85078 4.89349 5.08495 5.33450 5.49965 5.53975 5.64396 5.65636 5.75731 5.99718 6.21678 6.25393 6.29687 6.35785 6.64367 6.76412 6.85607 6.88529 6.99110 7.19098 7.28575 7.88091 8.02814 8.15685 8.70216 9.07715 9.45131 10.38242 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026031 B = 0.006369 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.394772 B = 4395.274308 C = 5047.708826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.252 1.252 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.354 4.354 8 H 0.107 0.893 9 N -0.437 5.437 10 C 0.538 3.462 11 O -0.582 6.582 12 C -0.111 4.111 13 C -0.011 4.011 14 C -0.156 4.156 15 C 0.108 3.892 16 N -0.506 5.506 17 H 0.444 0.556 18 N -0.026 5.026 19 N -0.209 5.209 20 C -0.037 4.037 21 C 0.005 3.995 22 C 0.069 3.931 23 C -0.195 4.195 24 C -0.185 4.185 25 H 0.279 0.721 26 H 0.189 0.811 27 H 0.132 0.868 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -1.484 3.277 3.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.137 4.137 3 Si 0.701 3.299 4 H -0.177 1.177 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.124 0.876 9 N -0.156 5.156 10 C 0.328 3.672 11 O -0.466 6.466 12 C -0.117 4.117 13 C -0.032 4.032 14 C -0.178 4.178 15 C -0.014 4.014 16 N -0.229 5.229 17 H 0.290 0.710 18 N -0.007 5.007 19 N -0.090 5.090 20 C -0.161 4.161 21 C -0.018 4.018 22 C -0.036 4.036 23 C -0.232 4.232 24 C -0.223 4.223 25 H 0.090 0.910 26 H 0.206 0.794 27 H 0.150 0.850 28 H 0.160 0.840 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.025 -2.621 3.823 4.748 hybrid contribution -0.897 1.612 -0.102 1.848 sum 0.128 -1.009 3.721 3.857 Atomic orbital electron populations 1.69689 1.06159 1.28765 1.44492 1.25597 0.95289 0.99077 0.93784 0.87041 0.80798 0.82370 0.79691 1.17681 1.21948 1.18444 1.19037 0.80659 0.95534 1.52905 0.87593 1.42965 1.06693 1.46548 1.19410 1.18073 0.85649 0.81779 0.81658 1.90667 1.14510 1.66247 1.75202 1.19722 0.96355 0.96790 0.98834 1.22489 0.91937 0.99801 0.88976 1.19897 1.02191 0.95063 1.00672 1.19644 0.96566 0.93847 0.91321 1.47596 1.22245 1.22852 1.30161 0.71030 1.81449 0.92819 1.10608 1.15824 1.74754 1.20051 1.11364 1.02825 1.19697 0.96041 0.97418 1.02928 1.20465 0.98644 0.91404 0.91314 1.21719 0.97426 1.00365 0.84062 1.23709 1.01220 0.95200 1.03118 1.23236 1.03192 0.98176 0.97736 0.91031 0.79438 0.85019 0.84027 0.86663 0.85887 0.89142 0.89514 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.63 13.96 55.50 0.77 -19.85 16 2 C 0.07 1.64 3.52 -17.45 -0.06 1.58 16 3 Si 0.88 18.47 23.93 -169.99 -4.07 14.41 16 4 H -0.25 -4.96 5.14 56.52 0.29 -4.67 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.26 -5.81 7.10 56.52 0.40 -5.41 16 7 C -0.35 -8.07 5.76 -15.00 -0.09 -8.16 16 8 H 0.11 2.57 7.00 -52.49 -0.37 2.20 16 9 N -0.44 -9.71 2.29 -108.87 -0.25 -9.96 16 10 C 0.54 12.08 7.42 -12.44 -0.09 11.98 16 11 O -0.58 -14.14 16.49 5.27 0.09 -14.05 16 12 C -0.11 -2.20 5.60 -105.03 -0.59 -2.79 16 13 C -0.01 -0.20 7.88 -39.52 -0.31 -0.51 16 14 C -0.16 -2.45 10.00 -39.89 -0.40 -2.85 16 15 C 0.11 1.73 7.35 -84.09 -0.62 1.11 16 16 N -0.51 -6.83 7.54 32.39 0.24 -6.59 16 17 H 0.44 4.09 8.96 -182.49 -1.64 2.45 16 18 N -0.03 -0.41 13.82 60.35 0.83 0.42 16 19 N -0.21 -3.74 12.40 32.14 0.40 -3.34 16 20 C -0.04 -0.67 7.26 -84.77 -0.62 -1.29 16 21 C 0.01 0.10 9.64 -38.74 -0.37 -0.28 16 22 C 0.07 1.41 4.42 -67.93 -0.30 1.11 16 23 C -0.20 -3.71 6.19 -26.73 -0.17 -3.87 16 24 C -0.18 -3.32 10.40 -26.73 -0.28 -3.60 16 25 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 26 H 0.19 3.78 4.83 -52.49 -0.25 3.53 16 27 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.14 2.56 7.90 -52.49 -0.41 2.14 16 29 H 0.12 2.35 7.83 -51.93 -0.41 1.95 16 30 H 0.12 2.60 4.88 -51.93 -0.25 2.35 16 31 H 0.09 1.55 7.36 -51.93 -0.38 1.16 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 276.63 15.07 4.17 4.17 Total: -1.00 -26.99 276.63 -5.93 -32.92 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.23 Total: 9.43 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.89 Total: -7.56 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 2.00 Total: -39.32 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.07 Total: 14.41 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.99 -5.93 -32.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299296156.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.275 kcal (2) G-P(sol) polarization free energy of solvation -26.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds