Wall clock time and date at job start Mon Mar 30 2020 01:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45750 * 117.94560 * 2 1 4 4 C 1.52923 * 110.48591 * 160.95004 * 3 2 1 5 5 C 1.53339 * 108.68660 * 50.74518 * 4 3 2 6 6 C 1.53071 * 108.42145 * 292.47958 * 5 4 3 7 7 H 1.09002 * 109.33021 * 288.81754 * 6 5 4 8 8 N 1.46500 * 109.40040 * 169.03261 * 6 5 4 9 9 C 1.34774 * 119.99961 * 154.57027 * 8 6 5 10 10 O 1.21281 * 120.00138 * 359.97438 * 9 8 6 11 11 C 1.50701 * 119.99741 * 180.02562 * 9 8 6 12 12 S 1.81005 * 109.47173 * 179.97438 * 11 9 8 13 13 C 1.76189 * 100.00097 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00127 * 0.02562 * 13 12 11 15 15 C 1.38805 * 120.00013 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00034 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48490 * 109.46901 * 150.00205 * 17 15 13 21 21 C 1.33358 * 117.94742 * 180.02562 * 2 1 3 22 22 O 1.21280 * 118.24675 * 2.20060 * 21 2 1 23 23 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46930 * 299.97052 * 1 2 3 25 25 H 1.08989 * 109.47391 * 59.97495 * 1 2 3 26 26 H 1.08996 * 109.30460 * 281.26324 * 3 2 1 27 27 H 1.08999 * 109.30044 * 40.84887 * 3 2 1 28 28 H 1.09001 * 109.60130 * 170.51214 * 4 3 2 29 29 H 1.09001 * 109.60365 * 290.99381 * 4 3 2 30 30 H 1.08994 * 109.67269 * 172.74812 * 5 4 3 31 31 H 1.08993 * 109.67506 * 52.21318 * 5 4 3 32 32 H 0.97002 * 119.99685 * 334.57529 * 8 6 5 33 33 H 1.09005 * 109.47318 * 59.99759 * 11 9 8 34 34 H 1.09002 * 109.47150 * 299.99724 * 11 9 8 35 35 H 0.97001 * 119.99662 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5950 1.1258 0.4676 5 6 4.2493 -0.0013 -0.3404 6 6 3.5838 -1.3240 0.0479 7 1 3.8883 -1.5983 1.0579 8 7 4.0010 -2.3716 -0.8874 9 6 3.9908 -3.6628 -0.5013 10 8 3.6368 -3.9575 0.6207 11 6 4.4205 -4.7403 -1.4632 12 16 4.2975 -6.3551 -0.6547 13 6 4.8424 -7.3967 -1.9671 14 1 5.1254 -6.9662 -2.9163 15 6 4.9081 -8.7707 -1.7810 16 7 5.3147 -9.5489 -2.7617 17 14 4.4194 -9.5153 -0.1390 18 1 5.6101 -9.5886 0.7453 19 1 3.3803 -8.6677 0.4992 20 1 3.8791 -10.8813 -0.3562 21 6 2.0900 -1.1781 -0.0005 22 8 1.4159 -2.1854 -0.0420 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5134 0.8903 25 1 -0.3633 0.5142 -0.8897 26 1 2.1394 1.7000 -1.0089 27 1 1.6294 1.9705 0.6729 28 1 4.1385 2.0563 0.3037 29 1 3.6107 0.8723 1.5276 30 1 5.3143 -0.0456 -0.1126 31 1 4.1087 0.1814 -1.4057 32 1 4.2846 -2.1359 -1.7846 33 1 5.4522 -4.5648 -1.7683 34 1 3.7741 -4.7228 -2.3407 35 1 5.3609 -10.5091 -2.6315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331093185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:13 Heat of formation + Delta-G solvation = -67.846185 kcal Electronic energy + Delta-G solvation = -18726.126603 eV Core-core repulsion = 15657.518706 eV Total energy + Delta-G solvation = -3068.607897 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.90245 -38.82600 -36.69918 -35.23916 -32.74226 -32.38559 -30.06222 -28.15348 -27.35474 -25.56813 -24.06931 -22.66927 -20.47112 -19.10726 -17.81096 -17.13100 -16.78870 -16.53844 -16.22536 -15.28683 -14.90716 -14.72642 -14.42852 -14.13209 -13.80600 -13.63875 -13.27875 -12.89867 -12.74682 -12.54863 -12.23890 -11.95719 -11.82853 -11.64509 -11.31599 -11.20665 -10.95901 -10.54445 -10.10666 -9.80471 -9.44319 -8.96134 -8.92659 -8.89357 -8.42851 -6.84727 -6.24167 -3.94817 2.40864 2.70369 2.88819 3.16151 3.35864 3.38873 3.56764 3.69686 4.26192 4.29110 4.32882 4.38516 4.45497 4.79717 4.90476 4.97789 5.08292 5.15078 5.17193 5.24202 5.30035 5.35787 5.50824 5.53597 5.71472 5.75347 5.83914 6.07642 6.16392 6.43191 7.23265 7.60152 7.99048 8.09462 8.46309 8.57748 9.22394 10.85133 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040294 B = 0.003953 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.717662 B = 7081.950048 C = 7340.636485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.114 3.886 4 C -0.133 4.133 5 C -0.130 4.130 6 C 0.141 3.859 7 H 0.118 0.882 8 N -0.724 5.724 9 C 0.537 3.463 10 O -0.503 6.503 11 C -0.121 4.121 12 S -0.139 6.139 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.882 5.882 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.234 1.234 20 H -0.274 1.274 21 C 0.496 3.504 22 O -0.518 6.518 23 H 0.092 0.908 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.402 0.598 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 26.577 3.947 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.349 5.349 3 C -0.009 4.009 4 C -0.171 4.171 5 C -0.168 4.168 6 C 0.032 3.968 7 H 0.136 0.864 8 N -0.379 5.379 9 C 0.323 3.677 10 O -0.376 6.376 11 C -0.272 4.272 12 S 0.087 5.913 13 C -0.669 4.669 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.519 5.519 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.158 1.158 20 H -0.200 1.200 21 C 0.282 3.718 22 O -0.392 6.392 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.236 0.764 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.661 25.306 5.742 26.365 hybrid contribution 0.351 0.079 -1.275 1.325 sum -4.310 25.385 4.467 26.133 Atomic orbital electron populations 1.21741 0.79748 1.04861 1.00934 1.47293 1.07410 1.05871 1.74332 1.21389 0.93141 0.84787 1.01613 1.21858 0.94677 0.99629 1.00983 1.21958 1.01140 0.92451 1.01249 1.20679 0.89876 0.88746 0.97544 0.86393 1.45747 1.69912 1.05660 1.16557 1.20247 0.76512 0.82428 0.88522 1.90701 1.44590 1.81422 1.20856 1.23249 1.04696 0.97797 1.01431 1.84815 1.88133 0.96109 1.22238 1.22339 1.50845 0.93779 0.99888 0.89411 1.24704 0.93502 0.95959 0.97103 1.69943 1.45159 1.04931 1.31829 0.86741 0.81115 0.79986 0.84091 1.19209 1.15837 1.19953 1.20803 0.91507 0.82978 0.76540 1.90786 1.65521 1.35448 1.47452 0.88954 0.92380 0.92391 0.91646 0.90598 0.89046 0.90451 0.89489 0.90436 0.76354 0.88497 0.88482 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.48 59.85 0.63 1.27 16 2 N -0.61 -6.20 3.21 -182.86 -0.59 -6.79 16 3 C 0.11 0.65 6.40 -4.49 -0.03 0.62 16 4 C -0.13 -0.65 6.02 -26.60 -0.16 -0.81 16 5 C -0.13 -0.87 5.51 -26.52 -0.15 -1.01 16 6 C 0.14 1.68 2.70 -69.30 -0.19 1.50 16 7 H 0.12 1.58 7.57 -51.93 -0.39 1.19 16 8 N -0.72 -9.97 4.96 -55.15 -0.27 -10.24 16 9 C 0.54 10.33 7.28 -10.99 -0.08 10.25 16 10 O -0.50 -11.74 15.10 4.62 0.07 -11.67 16 11 C -0.12 -2.48 6.16 36.01 0.22 -2.26 16 12 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 13 C -0.52 -15.45 10.04 30.94 0.31 -15.14 16 14 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 15 C 0.10 2.87 5.50 -17.43 -0.10 2.78 16 16 N -0.88 -27.15 13.97 55.49 0.78 -26.38 16 17 Si 0.86 22.41 27.74 -169.99 -4.72 17.69 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.23 -6.19 6.74 56.52 0.38 -5.81 16 20 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.50 6.97 7.20 -11.87 -0.09 6.89 16 22 O -0.52 -10.09 14.74 4.62 0.07 -10.02 16 23 H 0.09 1.13 6.59 -51.93 -0.34 0.78 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.14 -51.94 -0.42 0.00 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.40 4.19 8.59 -40.82 -0.35 3.84 16 33 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 34 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 35 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -38.62 306.90 -6.54 -45.16 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.89 Total: -0.77 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 0.38 Total: 4.08 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.09 Total: -43.40 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.14 Total: -21.69 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.72 Total: 17.69 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.62 -6.54 -45.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331093185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.684 kcal (2) G-P(sol) polarization free energy of solvation -38.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds